|
| Status |
Public on Sep 09, 2006 |
| Title |
abi4-102_5day_+lincomycin_rep1 |
| Sample type |
RNA |
| |
|
| Source name |
5 day old, light grown, whole seedlings+ 200 microgram/ml lincomycin
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
Ecotype: Col-0
genotype: abi4-102
Age: 5 days
Tissue: whole seedling
|
| Biomaterial provider |
Shai Koussevitzky, Plant Biology Laboratory, The Salk Institute
|
| Treatment protocol |
Seeds were surface sterilized and plated on 1/2 Murashige Skoog (MS) medium containing 1% sucrose with 220 µg/ml lincomycin.
|
| Growth protocol |
Seedlings were grown at 21o C, under light/dark cycles of 20 µmol/m-2/sec-1.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with the RNeasy kit (Qiagen; Hilden, Germany)
|
| Label |
biotin
|
| Label protocol |
Affymetrix protocol.
|
| |
|
| Hybridization protocol |
Affymetrix protocol.
|
| Description |
Purpose of the experimen is to study the difference in genomic response to lincomycin in three genotypes (Col-0, abi4, gun1).
|
| Data processing |
All 12 arrays were pre-processed using RMA mehtod provided by bioconductor
|
| |
|
| Submission date |
Sep 05, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Joanne Chory |
| E-mail(s) |
[email protected]
|
| Phone |
858-453-4100
|
| URL |
http://cactus.salk.edu
|
| Organization name |
The Salk Institute for Biological Studies
|
| Department |
Plant Biology Laboratory
|
| Street address |
10010 N. Torrey Pines Road.
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL198 |
| Series (1) |
| GSE5770 |
col0,gun1,abi4-102, w/wo lincomycin |
|
| Relations |
| Reanalyzed by |
GSE118579 |
| Reanalyzed by |
GSE119083 |
