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Sample GSM134303 Query DataSets for GSM134303
Status Public on Jan 08, 2007
Title Penfield_1-5_endosperm-ABA_Rep2_ATH1
Sample type RNA
 
Source name Ler-0
Organism Arabidopsis thaliana
Characteristics Stock Code: NW20
Developmental stage: 0.50
Tissue: endosperm
Extracted molecule total RNA
Label biotin
 
Description stratification: 3 days at 4 degrees celsius
sterilisation: 100% ethanol rinse
Growth substrate type: Agar (100-200 seeds per plate)
Growth medium: Murashige and Skoog basal salt mixture
Growth protocol: Seeds were sown on MS medium supplented with 20uM ABA (mixed iosmers, sigma), stratified for 3 days at 4 degrees celsius, then tranferred to a growth room at 22 degrees celsius under continuous white light at 80-100 umol m-2 for 24 hours
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.81661840820313E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 4.27406542968750E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 1.00983148193359E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 1.30841870117188E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 3.76825317382813E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 3.97480499267578E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 1.35549453735352E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 1.28963867187500E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 9.68750305175781E+001 P 1.95312988944352E-003
AFFX-r2-Bs-thr-M_s_at 3.20390677452087E+000 A 7.25830018520355E-001
AFFX-r2-Bs-thr-5_s_at 7.98245525360107E+000 M 5.61522990465164E-002
AFFX-r2-Bs-thr-3_s_at 1.84251463413239E+000 A 7.25830018520355E-001
AFFX-r2-Bs-phe-M_at 1.19773960113525E+000 A 7.80517995357513E-001
AFFX-r2-Bs-phe-5_at 8.62770378589630E-001 A 9.04784977436066E-001
AFFX-r2-Bs-phe-3_at 3.55323362350464E+000 A 4.66064006090164E-001
AFFX-r2-Bs-lys-M_at 3.20150852203369E+000 A 7.53906011581421E-001
AFFX-r2-Bs-lys-5_at 2.82118082046509E+000 A 4.32372987270355E-001
AFFX-r2-Bs-lys-3_at 6.63933610916138E+000 A 1.29638999700546E-001
AFFX-r2-Bs-dap-M_at 3.68294429779053E+000 A 6.01073980331421E-001
AFFX-r2-Bs-dap-5_at 6.37218117713928E-001 A 9.69726979732513E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM134303.CEL.gz 2.0 Mb (ftp)(http) CEL

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