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Sample GSM133888 Query DataSets for GSM133888
Status Public on Jan 08, 2007
Title Raghavan_1-2_1MM-1HR-A_Rep1_ATH1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Developmental stage: At this stage the plants had developed four rosette leaves 1.04
Tissue: whole plant
Treatment protocol The chemical 2,4-D was dissolved in water and the pH was adjusted to 7.0. Plates were flooded with 1 mL of stock solutions of 2,4-D.
Extracted molecule total RNA
Label biotin
 
Description Sample: hormone - 2,4-D, 1 mM , duration: 1 hour
growth media substrate: phytagel - 1 % for 14 days
light regime: darkness - 48 hours
photoperiod: 16 hr - 14 day
nutrients: MS medium for 14 days
sugar : sucrose, 1.5 %, 14 days
average daily temperature: 14 days
temperature: 4 C for 48 hours
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5743 Whole genome expression in response to herbicidal levels of 2,4-D application
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 5.35268359375000E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 4.31064941406250E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 1.19839428710938E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 1.27823291015625E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 3.74192108154297E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 4.52889556884766E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 1.04709999084473E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 1.08252937316895E+002 P 1.95312988944352E-003
AFFX-r2-Ec-bioB-3_at 1.19073394775391E+002 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 6.54724550247192E+000 A 3.98925989866257E-001
AFFX-r2-Bs-thr-5_s_at 9.01882076263428E+000 A 9.52147990465164E-002
AFFX-r2-Bs-thr-3_s_at 8.90419721603394E-001 A 9.19434010982513E-001
AFFX-r2-Bs-phe-M_at 3.44638323783875E+000 A 5.00000000000000E-001
AFFX-r2-Bs-phe-5_at 2.40711912512779E-001 A 9.89257991313934E-001
AFFX-r2-Bs-phe-3_at 6.30231714248657E+000 A 5.00000000000000E-001
AFFX-r2-Bs-lys-M_at 6.22023391723633E+000 A 3.66210997104645E-001
AFFX-r2-Bs-lys-5_at 3.86853742599487E+000 A 3.34473013877869E-001
AFFX-r2-Bs-lys-3_at 8.25500869750977E+000 P 2.39257998764515E-002
AFFX-r2-Bs-dap-M_at 5.49480819702148E+000 A 1.49657994508743E-001
AFFX-r2-Bs-dap-5_at 8.19370985031128E-001 A 8.70360970497131E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133888.CEL.gz 2.0 Mb (ftp)(http) CEL

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