NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1325263 Query DataSets for GSM1325263
Status Public on Jun 20, 2014
Title TLwS14d_4
Sample type RNA
 
Source name Tumor liver Sorafenib-treated 14d
Organism Mus musculus
Characteristics strain: C57BL6n
age: 12-15 weeks
tissue: liver
Treatment protocol 60 mg/kg oral application of Sorafenib for 14d and 83d (LT) or equal amount of vehicle solution for 14d
Extracted molecule total RNA
Extraction protocol twice TRIZOL extraction according to the manufactur's protocol
Label biotin
Label protocol not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
Chip ID: 6085341051
Position: A
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Feb 10, 2014
Last update date Jun 20, 2014
Contact name Anja Runge
E-mail(s) [email protected]
Organization name German Cancer Research Center
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL17543
Series (1)
GSE54857 Whole genome profiling of whole liver lysates of vehicle and Sorafenib-treated iAST mice

Data table header descriptions
ID_REF
VALUE quantile normalized
TLwS14d_4_6085341051_A.sd
TLwS14d_4_6085341051_A.pvalue
TLwS14d_4_6085341051_A.nbeads

Data table
ID_REF VALUE TLwS14d_4_6085341051_A.sd TLwS14d_4_6085341051_A.pvalue TLwS14d_4_6085341051_A.nbeads
ILMN_1250052 91.34330726 17.46915101 0.51576866 47
ILMN_3122480 88.21699571 17.29697406 0.842250106 30
ILMN_2599935 156.1034182 43.75263512 2.7285E-11 38
ILMN_2675543 93.35884449 17.50571855 0.24684457 40
ILMN_2686883 92.64279652 15.74875003 0.342694783 29
ILMN_2751818 91.83488068 21.35400048 0.453752227 41
ILMN_2728634 97.35766639 15.94592313 0.009745069 43
ILMN_3040515 97.68911276 26.20392299 0.069986996 40
ILMN_2711608 103.6557649 16.83211269 0.000172121 31
ILMN_1232875 92.3544154 20.27430556 0.408773763 27
ILMN_1258507 94.26709802 18.48530368 0.161427483 43
ILMN_2746142 97.62228493 23.34960784 0.072372131 32
ILMN_1252690 88.48720176 14.40159249 0.89300924 38
ILMN_2655499 84.47000344 11.25938665 0.998785698 29
ILMN_1252870 88.77345135 15.91921551 0.779854143 22
ILMN_1248179 92.35001388 18.42148029 0.374530592 43
ILMN_2649955 139.7997571 34.92682368 2.22525E-09 33
ILMN_2628708 159.5318017 37.85567907 9.6665E-11 29
ILMN_3024781 90.93420958 21.23748816 0.564343973 46
ILMN_2705628 94.29729836 24.64291041 0.220909438 45

Total number of rows: 26512

Table truncated, full table size 1337 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap