NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM131408 Query DataSets for GSM131408
Status Public on Jan 08, 2007
Title AtGen_6-7612_UV-Bstress-Shoots-24.0h_Rep2
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Shoots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
UV-B stress (15 min. 1.18 W/m2 Philips TL40W/12), Group Harter
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.67292382812500E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 3.21791992187500E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 3.97993591308594E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 5.77982482910156E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.67831329345703E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.98513702392578E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 8.29835739135742E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 5.55602760314941E+001 P 7.32421991415322E-004
AFFX-r2-Ec-bioB-3_at 4.97430992126465E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 7.66468405723572E-001 A 8.28612983226776E-001
AFFX-r2-Bs-thr-5_s_at 6.45291042327881E+000 P 2.39257998764515E-002
AFFX-r2-Bs-thr-3_s_at 1.76827383041382E+000 A 7.25830018520355E-001
AFFX-r2-Bs-phe-M_at 1.15127968788147E+000 A 5.00000000000000E-001
AFFX-r2-Bs-phe-5_at 6.49710357189178E-001 A 7.25830018520355E-001
AFFX-r2-Bs-phe-3_at 5.94697856903076E+000 P 3.02734002470970E-002
AFFX-r2-Bs-lys-M_at 4.55148398876190E-001 A 7.25830018520355E-001
AFFX-r2-Bs-lys-5_at 2.17437267303467E+000 A 5.33936023712158E-001
AFFX-r2-Bs-lys-3_at 1.53497111797333E+000 A 2.74170011281967E-001
AFFX-r2-Bs-dap-M_at 5.05507707595825E-001 A 8.05419981479645E-001
AFFX-r2-Bs-dap-5_at 6.20322942733765E-001 A 9.04784977436066E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131408.CEL.gz 2.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap