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Sample GSM131389 Query DataSets for GSM131389
Status Public on Jan 08, 2007
Title AtGen_6-7121_UV-Bstress-Roots-0.5h_Rep1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Roots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
UV-B stress (15 min. 1.18 W/m2 Philips TL40W/12), Group Harter
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.39960839843750E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 2.55680834960938E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 3.42426605224609E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 5.32007751464844E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.32682647705078E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.44335998535156E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 9.73083114624023E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 7.08026199340820E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 5.09680099487305E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 9.83078837394714E-001 A 7.80517995357513E-001
AFFX-r2-Bs-thr-5_s_at 5.24457073211670E+000 A 2.46094003319740E-001
AFFX-r2-Bs-thr-3_s_at 1.08499670028687E+000 A 6.33789002895355E-001
AFFX-r2-Bs-phe-M_at 9.15927708148956E-001 A 4.66064006090164E-001
AFFX-r2-Bs-phe-5_at 3.41213494539261E-001 A 8.50341975688934E-001
AFFX-r2-Bs-phe-3_at 9.91494596004486E-001 A 7.25830018520355E-001
AFFX-r2-Bs-lys-M_at 4.97558899223804E-002 A 5.67627012729645E-001
AFFX-r2-Bs-lys-5_at 1.63980221748352E+000 A 4.66064006090164E-001
AFFX-r2-Bs-lys-3_at 3.59196138381958E+000 A 1.29638999700546E-001
AFFX-r2-Bs-dap-M_at 1.60125702619553E-001 A 9.19434010982513E-001
AFFX-r2-Bs-dap-5_at 2.91415750980377E-001 A 9.04784977436066E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131389.CEL.gz 2.3 Mb (ftp)(http) CEL

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