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Sample GSM128790 Query DataSets for GSM128790
Status Public on Aug 15, 2006
Title Zarka_1-2_MT-WT0HB_Rep2_ATH1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Developmental stage: 10 day old
Tissue: whole plant
Treatment protocol This was a control sample and was harvested under the biosample growth conditions.
Extracted molecule total RNA
Label biotin
 
Description temperature: 4C for 0 hours
growth media substrate: phytagar 0.80%
light intensity : 100 umol m-2 s-1
light regime: continuous light
light source: fluorescence
nutrients: Gamborg's B5 salts 1X
stratification: 4C for 4 days
average daily temperature: 24C for 10 days
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 15, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5534 Response to cold, plate grown plants
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 5.00072265625000E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 4.88899218750000E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 1.15365576171875E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 9.77697631835938E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 3.55369476318359E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 3.72375427246094E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 1.22222953796387E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 1.27054267883301E+002 P 1.22069998178631E-003
AFFX-r2-Ec-bioB-3_at 1.42168136596680E+002 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 2.09984550476074E+001 A 5.67627012729645E-001
AFFX-r2-Bs-thr-5_s_at 1.12206211090088E+001 A 2.46094003319740E-001
AFFX-r2-Bs-thr-3_s_at 8.80936503410339E-001 A 9.32372987270355E-001
AFFX-r2-Bs-phe-M_at 5.39879858493805E-001 A 7.53906011581421E-001
AFFX-r2-Bs-phe-5_at 5.53890228271484E+000 A 4.32372987270355E-001
AFFX-r2-Bs-phe-3_at 1.15364849567413E+000 A 8.28612983226776E-001
AFFX-r2-Bs-lys-M_at 9.41830217838287E-001 A 8.88427972793579E-001
AFFX-r2-Bs-lys-5_at 5.14038038253784E+000 A 2.74170011281967E-001
AFFX-r2-Bs-lys-3_at 1.61348342895508E+000 A 6.33789002895355E-001
AFFX-r2-Bs-dap-M_at 3.48266661167145E-001 A 6.96289002895355E-001
AFFX-r2-Bs-dap-5_at 3.22080522775650E-001 A 9.97070014476776E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM128790.CEL.gz 3.3 Mb (ftp)(http) CEL

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