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Sample GSM128730 Query DataSets for GSM128730
Status Public on Aug 15, 2006
Title Hennig_1-2_flowers-CK_021114_2_A_Rep1_ATH1
Sample type RNA
 
Source name Landsberg erecta
Organism Arabidopsis thaliana
Characteristics Developmental stage: 6 weeks
Tissue: open pollinated flowers
Extracted molecule total RNA
Label biotin
 
Description Experimental Design: Plants (Arabidopsis L. Heynh., accession Landsberg erecta) were grown in growth chambers at 70% humidity and daily cycles of 16 h light at 21°C and 8 h darkness at 21°C. Plant material used for the experiments was pooled from 12 plants. Samples contained complete flowers. About 10% of the tissues for each sample were cleared and analyzed by microscopy to ensure that homogenous developmental stages were harvested. The entire experiment was performed twice providing independent biological replicates.
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 15, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.09564501953125E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 3.38236279296875E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 5.89144287109375E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 7.48218261718750E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.59738464355469E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 2.28976211547852E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 1.03650901794434E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 8.51651687622070E+001 P 7.32421991415322E-004
AFFX-r2-Ec-bioB-3_at 9.96017990112305E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 5.03738355636597E+000 A 3.98925989866257E-001
AFFX-r2-Bs-thr-5_s_at 1.01322574615479E+001 P 1.07421996071935E-002
AFFX-r2-Bs-thr-3_s_at 9.72880303859711E-001 A 4.66064006090164E-001
AFFX-r2-Bs-phe-M_at 4.10839748382568E+000 A 5.67627012729645E-001
AFFX-r2-Bs-phe-5_at 2.48301938176155E-001 A 9.53857004642487E-001
AFFX-r2-Bs-phe-3_at 3.16825032234192E+000 A 6.01073980331421E-001
AFFX-r2-Bs-lys-M_at 7.31968283653259E-001 A 6.01073980331421E-001
AFFX-r2-Bs-lys-5_at 1.02167344093323E+000 A 6.01073980331421E-001
AFFX-r2-Bs-lys-3_at 9.48061752319336E+000 P 2.39257998764515E-002
AFFX-r2-Bs-dap-M_at 1.74355670809746E-001 A 9.32372987270355E-001
AFFX-r2-Bs-dap-5_at 5.13659596443176E-001 A 8.88427972793579E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM128730.CEL.gz 3.3 Mb (ftp)(http) CEL

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