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Sample GSM1267469 Query DataSets for GSM1267469
Status Public on Nov 19, 2013
Title primary_lung_cancer_B120
Sample type RNA
 
Source name primary lung cancer
Organism Homo sapiens
Characteristics tissue: primary lung cancer
Post Surgical Treatment: OBS
Stage: 1B
age: 35.4
Sex: Male
Cause of death: Alive
Histology type: ADC
OS time: 6.12
OS status: Alive
dss survival time: 6.12
DSS status: Alive
dcc sample: Yes
predominant subtype: invasive mucinous
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Data processing The data were preprocessed using RMA v0.5.
 
Submission date Nov 18, 2013
Last update date Dec 29, 2014
Contact name Ming Tsao
E-mail(s) [email protected]
Phone 4169464501
Organization name University of Toronto
Department Ontario Cancer Institute
Lab Applied Molecular Oncology
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G2M9
Country Canada
 
Platform ID GPL96
Series (1)
GSE14814 Prognostic and Predictive Gene Signature for Adjuvant Chemotherapy in Resected Non-Small-Cell Lung Cancer

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity (log2)

Data table
ID_REF VALUE
1007_s_at 9.309098
1053_at 5.763528
117_at 6.001771
121_at 8.138964
1255_g_at 3.779001
1294_at 7.617259
1316_at 4.917481
1320_at 4.646031
1405_i_at 5.984515
1431_at 3.523935
1438_at 6.962385
1487_at 7.473364
1494_f_at 6.595574
1598_g_at 9.500109
160020_at 7.987262
1729_at 7.642185
1773_at 5.574858
177_at 5.504429
179_at 8.687428
1861_at 6.437685

Total number of rows: 22215

Table truncated, full table size 430 Kbytes.




Supplementary file Size Download File type/resource
GSM1267469_CL20041116127AA.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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