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Sample GSM124885

Query DataSets for GSM124885

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_0423, rep1

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_0423

Organism

Characteristics

Charolais, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from a charolais fetal calf at 260 days of gestation (male).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	-0.09	100	921	932	197	259	467	99	0	393	376	89	70	87	26	0	0	1.035
2	null	80	584	590	136	268	280	90	0	111	118	37	68	75	22	0	0	2.878
3	0.14	110	1448	1401	275	222	248	82	0	1001	1000	162	68	73	23	0	0	0.394
4	-0.97	100	794	831	198	281	315	112	0	576	583	113	71	75	26	0	0	0.023
5	-0.01	90	1612	1632	235	300	340	125	0	1273	1286	223	70	78	27	0	0	0.125
6	-0.09	90	831	844	148	241	345	95	0	317	320	79	72	87	26	0	0	1.268
7	null	110	590	594	174	192	208	74	0	114	112	41	69	75	25	0	0	3.145
8	null	100	790	805	196	200	211	73	0	101	104	39	71	75	27	0	0	4.298
9	0.35	90	1263	1292	248	199	208	69	0	648	649	129	69	74	22	0	0	0.878
10	-0.34	90	912	924	242	225	237	83	0	548	530	131	70	74	26	0	0	0.523
11	0.78	100	5828	5580	1226	210	234	88	0	4397	4134	952	70	80	26	0	0	0.377
12	-0.04	100	723	759	195	200	233	78	0	241	231	77	69	77	27	0	0	1.604
13	1.26	130	1605	1496	422	186	224	68	0	458	449	143	67	96	27	0	0	1.86
14	0.02	90	1674	1546	445	177	200	65	0	1503	1437	231	70	75	27	0	0	0.063
15	0.18	110	2278	2132	528	167	182	62	0	2101	1990	542	66	75	26	0	0	0.053
16	0.20	100	823	816	194	156	163	63	0	296	287	77	64	69	25	0	0	1.524
17	0.16	120	1546	1423	480	159	169	63	0	1198	1088	395	66	70	25	0	0	0.293
18	null	90	564	559	124	170	185	59	0	108	107	36	66	69	27	0	0	3.23
19	0.44	120	1692	1659	445	172	188	66	0	1078	1063	254	65	69	24	0	0	0.585
20	null	140	675	690	202	161	176	64	0	101	106	35	65	69	24	0	0	3.836

Total number of rows: 22176

Table truncated, full table size 1525 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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