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Sample GSM124877

Query DataSets for GSM124877

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_C108, rep1

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_C108

Organism

Characteristics

INRA95, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a heterozygote for the myostatin Q204X mutation.

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	-0.05	100	1280	1269	199	234	239	81	0	888	871	177	66	71	23	0	0	0.348
2	null	120	555	619	482	234	241	81	0	116	128	56	64	71	22	0	0	2.626
3	-0.10	110	1676	1679	325	210	226	73	0	1572	1568	279	63	73	21	0	0	-0.042
4	-0.62	90	926	933	188	201	223	68	0	780	781	104	69	83	24	0	0	0.028
5	-0.13	100	1798	1664	463	192	221	73	0	1833	1693	450	66	79	24	0	0	-0.138
6	-0.80	90	664	676	176	189	201	72	0	385	393	77	70	77	27	0	0	0.593
7	null	80	535	551	131	183	200	70	0	108	109	41	62	63	25	0	0	2.936
8	null	110	800	815	155	185	200	67	0	100	103	41	65	66	24	0	0	4.135
9	0.07	90	1288	1242	297	196	209	71	0	856	820	158	60	68	23	0	0	0.456
10	-1.05	100	766	744	248	196	209	79	0	723	729	204	60	67	23	0	0	-0.218
11	0.77	100	6442	5763	2043	201	314	78	0	5402	4695	1435	63	135	24	0	0	0.225
12	0.19	90	871	904	187	215	226	81	0	276	280	60	62	69	21	0	0	1.616
13	0.90	120	1511	1484	355	194	212	72	0	555	542	142	62	79	23	0	0	1.418
14	-0.10	100	1404	1289	515	178	191	72	0	1202	1103	511	61	65	21	0	0	0.104
15	-0.11	100	1582	1488	454	173	189	68	0	1494	1383	508	63	69	23	0	0	-0.022
16	0.07	90	758	773	169	160	171	61	0	259	257	67	63	68	21	0	0	1.609
17	0.05	120	844	939	491	180	190	72	0	326	429	318	65	69	23	0	0	1.347
18	null	100	473	479	143	164	173	89	0	80	80	20	59	65	24	0	0	3.879
19	-0.17	120	803	817	421	170	187	93	0	361	378	212	57	60	22	0	0	1.058
20	null	130	829	853	181	202	211	78	0	105	111	42	61	66	23	0	0	3.833

Total number of rows: 22176

Table truncated, full table size 1524 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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