|
| Status |
Public on Jul 17, 2007 |
| Title |
Fetal calf 260 days, ST_C107, rep4 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Fetal calf 260 days, ST_C107
|
| Organism |
Bos taurus |
| Characteristics |
INRA95, Fetal calf 260 days p.c., Double-Muscled
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Pool of 21 samples (ST muscle )
|
| Organism |
Bos taurus |
| Characteristics |
Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a homozygote for the myostatin Q204X mutation.
|
| Data processing |
After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.
|
| |
|
| Submission date |
Aug 03, 2006 |
| Last update date |
Jul 17, 2007 |
| Contact name |
Isabelle CASSAR-MALEK |
| E-mail(s) |
[email protected]
|
| Organization name |
INRA
|
| Department |
Centre de Clermont-Fd/Theix
|
| Lab |
Equipe Croissance et métabolisme du Muscle (C2M)
|
| Street address |
Theix
|
| City |
Saint-Genès-Champanelle |
| ZIP/Postal code |
63122 |
| Country |
France |
| |
|
| Platform ID |
GPL4049 |
| Series (1) |
| GSE5456 |
Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses |
|
| Data table header descriptions |
| ID_REF |
ID from Myochips M2 platform |
| VALUE |
Normalized log2 ratio of medians defined as CH1 divided by CH2 |
| dia |
Diameter of the spot |
| FCh1Median |
Channel 1 median intensity |
| FCh1Mean |
Channel 1 mean intensity |
| FCh1SD |
Channel 1 mean standard deviation |
| BCh1Median |
Channel 1 median background intensity |
| BCh1Mean |
Channel 1 mean background intensity |
| BCh1SD |
Channel 1 background standard deviation |
| percCh1Sat |
percentage of Channel 1 saturation |
| FCh2Median |
Channel 2 median intensity |
| FCh2Mean |
Channel 2 mean intensity |
| FCh2SD |
Channel 2 mean standard deviation |
| BCh2Median |
Channel 2 median background intensity |
| BCh2Mean |
Channel 2 mean background intensity |
| BCh2SD |
Channel 2 background standard deviation |
| percCh2Sat |
percentage of Channel 2 saturation |
| flags |
0 denotes satisfactory features, while <0 denotes features that did not meet |
| MValue |
log2 ratio of medians defined as CH1 divided by CH2 |
