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Sample GSM124873

Query DataSets for GSM124873

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_C107, rep1

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_C107

Organism

Characteristics

INRA95, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a homozygote for the myostatin Q204X mutation.

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.39	100	1322	1325	252	309	328	108	0	666	661	127	63	73	27	0	0	0.748
2	null	90	969	949	203	405	448	132	0	126	127	56	62	73	28	0	-100	3.14
3	0.48	110	1509	1550	217	315	364	115	0	822	809	163	55	62	24	0	0	0.639
4	0.08	110	1115	1115	197	245	281	96	0	636	626	128	55	60	24	0	0	0.582
5	0.19	100	1825	1781	538	180	196	69	0	1643	1495	456	58	68	24	0	0	0.054
6	null	90	664	672	141	167	181	70	0	352	358	72	60	74	24	0	-100	0.767
7	null	80	450	470	138	134	143	57	0	135	133	48	54	60	23	0	-100	1.964
8	null	100	772	753	156	134	143	60	0	109	110	43	53	56	23	0	0	3.51
9	-0.10	90	1156	1093	281	134	160	59	0	986	947	187	58	74	26	0	0	0.139
10	-0.93	100	594	592	226	146	167	60	0	391	370	138	56	71	25	0	0	0.419
11	0.21	100	4871	4472	1471	145	204	62	0	5971	5367	1633	62	118	26	0	0	-0.322
12	-0.25	80	725	730	174	145	223	58	0	376	385	75	61	131	24	0	0	0.881
13	0.71	110	1464	1473	248	156	191	71	0	802	833	182	58	77	24	0	0	0.814
14	-0.04	100	1898	1722	651	160	182	61	0	2074	1921	678	61	73	30	0	0	-0.212
15	0.07	100	2612	2450	534	156	166	60	0	3002	2861	584	59	69	25	0	0	-0.261
16	0.27	90	914	908	165	157	173	58	0	411	426	94	57	68	24	0	0	1.097
17	0.21	110	1789	1780	403	154	171	63	0	1614	1583	322	57	64	26	0	0	0.071
18	null	90	556	569	166	140	154	52	0	123	134	54	55	60	26	0	0	2.613
19	0.36	110	1618	1623	268	157	179	62	0	1230	1261	205	53	62	24	0	0	0.312
20	null	130	715	744	150	167	189	64	0	103	107	37	55	64	23	0	0	3.513

Total number of rows: 22176

Table truncated, full table size 1537 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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