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Sample GSM124751

Query DataSets for GSM124751

Status

Public on Aug 19, 2006

Title

Bull 19 months, LT_02547, Replicate4

Sample type

RNA

Channel 1

Source name

Bull 19 months, LT_02547

Organism

Characteristics

Charolais 2003, Bull 19 months, T, Jm, Fm+, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples(muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle of Charolais bull calves at 19 months of age. This muscle gives a meat which is flavored (Fm+) and which is of average tenderness (T) and juiciness (Jm)

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	-0.02	100	1304	1273	302	76	113	33	0	1011	1009	238	58	85	27	0	0	0.366
2	null	100	352	354	86	83	116	36	0	170	176	62	65	91	29	0	0	1.357
3	-0.37	110	2391	2273	644	80	95	32	0	2793	2696	494	64	76	29	0	0	-0.24
4	-0.13	100	1080	1088	253	73	91	30	0	861	852	222	63	78	29	0	0	0.336
5	-0.2	110	2893	2568	920	77	88	33	0	3068	2840	776	64	73	28	0	0	-0.093
6	-0.28	90	845	833	195	90	113	36	0	658	640	133	67	88	30	0	0	0.353
7	null	90	304	309	97	81	88	36	0	101	109	44	66	73	30	0	0	2.672
8	0.91	100	568	664	431	81	85	34	0	131	257	459	64	69	30	0	0	2.862
9	0.04	100	1465	1368	401	74	78	30	0	1130	1076	362	60	66	28	0	0	0.379
10	-0.2	110	1350	1273	372	75	81	29	0	1217	1164	393	61	67	27	0	0	0.141
11	-0.04	110	6720	6136	1845	80	110	33	0	7047	6713	1293	68	88	33	0	0	-0.072
12	-0.12	90	681	676	155	83	114	32	0	407	416	115	62	86	30	0	0	0.794
13	0.84	110	1376	1346	267	77	96	33	0	568	575	137	64	73	28	0	0	1.366
14	0.05	100	1588	1496	538	75	87	30	0	1245	1153	376	63	70	30	0	0	0.356
15	-0.19	110	2415	2316	539	79	91	34	0	2474	2377	509	62	72	31	0	0	-0.046
16	-0.26	100	546	545	144	76	89	32	0	318	305	99	68	78	31	0	0	0.911
17	-0.17	100	1420	1338	343	73	77	29	0	1283	1190	354	67	74	31	0	0	0.148
18	null	80	301	301	88	70	74	29	0	136	143	46	68	73	27	0	0	1.764
19	-0.31	100	1292	1216	322	69	76	30	0	1266	1226	336	66	71	28	0	0	0.027
20	null	110	437	433	92	75	83	33	0	96	112	61	66	72	27	0	0	3.593

Total number of rows: 22176

Table truncated, full table size 1496 Kbytes.

Supplementary data files not provided

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