GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM124657

Query DataSets for GSM124657

Status

Public on Aug 19, 2006

Title

Bull 19 months, LT_02594, Replicate1

Sample type

RNA

Channel 1

Source name

Bull 19 months, LT_02594

Organism

Characteristics

Charolais 2003, Bull 19 months, T-, Jm, Fm-, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples(muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle of Charolais bull calves at 19 months of age. This muscle gives a meat which is not tender (T-) and not flavored (Fm-) and which is of average juiciness (Jm)

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.17	100	780	759	182	94	98	32	0	753	729	205	78	85	32	0	0	0.023
2	null	90	290	287	52	81	88	31	0	181	191	55	71	79	31	0	0	0.926
3	0.17	110	2034	1921	390	87	98	32	0	2667	2514	531	70	79	30	0	0	-0.416
4	0.08	90	809	824	124	83	96	30	0	871	865	135	77	92	36	0	0	-0.129
5	0.13	100	2342	2119	706	80	87	26	0	3285	2970	1124	75	84	33	0	0	-0.505
6	0.15	100	698	667	197	79	84	28	0	662	629	179	67	75	30	0	0	0.057
7	null	90	235	243	59	80	88	29	0	124	126	52	77	86	34	0	0	1.722
8	null	100	374	383	94	77	84	28	0	160	161	59	77	85	33	0	0	1.839
9	0.29	90	993	968	273	85	93	31	0	980	960	227	79	81	34	0	0	0.011
10	-0.04	90	877	846	215	108	118	37	0	1060	1031	242	99	106	43	0	0	-0.322
11	0.58	100	6047	5498	1419	91	96	34	0	6642	6017	1729	84	94	36	0	0	-0.139
12	0.43	80	500	493	70	85	93	31	0	324	324	84	85	91	38	0	0	0.796
13	0.97	100	990	966	172	88	101	31	0	567	563	156	82	90	34	0	0	0.895
14	0.32	100	1243	1007	481	75	88	28	0	1312	1253	589	75	85	32	0	0	-0.083
15	-0.07	100	1880	1783	426	79	86	29	0	2969	2736	795	77	84	34	0	0	-0.683
16	0.28	90	475	474	76	82	91	30	0	339	336	93	84	88	33	0	0	0.624
17	-0.06	100	941	862	308	75	80	29	0	1234	1225	332	79	87	32	0	0	-0.415
18	null	70	203	200	44	75	77	24	0	129	137	38	83	87	32	0	0	1.476
19	-0.14	110	1033	1000	290	70	73	24	0	1491	1368	411	70	76	29	0	0	-0.561
20	null	100	317	320	62	69	73	25	0	134	140	52	80	85	35	0	0	2.199

Total number of rows: 22176

Table truncated, full table size 1489 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |