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Sample GSM124631

Query DataSets for GSM124631

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02576, rep2

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02576

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, Tm, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is of average tenderness (Tm), juiciness (Jm) and flavor (Fm).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.19	100	1060	1040	205	70	84	26	0	1059	1025	290	94	104	43	0	0	0.037
2	null	100	254	256	57	69	177	27	0	207	219	85	90	106	38	0	0	0.661
3	-0.05	110	2760	2647	593	67	76	25	0	3761	3636	609	97	105	41	0	0	-0.444
4	0.2	110	1010	970	211	75	155	28	0	987	942	280	96	105	43	0	0	0.07
5	0.08	100	3380	3056	829	86	877	37	0	4300	4046	979	87	93	39	0	0	-0.355
6	0.15	110	776	787	210	121	1399	88	0	672	622	215	104	108	45	0	0	0.206
7	null	120	1683	2616	2732	513	984	478	0	120	127	59	96	102	42	0	-100	5.607
8	null	110	3456	4468	3189	557	738	467	0	142	153	62	96	101	44	0	-100	5.978
9	null	120	2277	2867	1940	670	1006	401	0	808	795	522	99	104	40	0	-100	1.181
10	-0.11	100	1582	1595	333	697	936	221	0	1148	1124	354	99	105	39	0	0	-0.245
11	0.06	100	6470	5965	1391	559	589	134	0	8152	7492	1884	103	111	46	0	0	-0.445
12	null	70	962	959	107	505	521	119	0	454	451	123	106	113	47	0	-100	0.393
13	null	100	1417	1429	217	484	500	114	0	601	592	167	103	111	45	0	-100	0.906
14	0.11	90	1868	1895	211	541	577	131	0	1550	1533	273	96	103	44	0	0	-0.132
15	-0.31	100	2307	2227	405	441	486	132	0	3005	2846	698	92	98	41	0	0	-0.643
16	null	90	653	650	96	330	346	104	0	303	317	103	93	99	38	0	0	0.621
17	0.02	90	1385	1425	226	350	386	155	0	1247	1250	236	96	98	45	0	0	-0.153
18	null	100	617	674	311	401	432	180	0	114	119	49	102	105	45	0	-50	4.17
19	0.19	100	1787	1901	638	374	373	226	0	1567	1453	409	89	94	40	0	0	-0.065
20	null	70	401	405	95	304	303	131	0	128	129	53	90	102	41	0	0	1.352

Total number of rows: 22176

Table truncated, full table size 1487 Kbytes.

Supplementary data files not provided

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