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Sample GSM124627

Query DataSets for GSM124627

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02575, rep2

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02575

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, Tm, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is of average tenderness (Tm), juiciness (Jm) and flavor (Fm).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	-0.09	100	1017	986	212	68	84	29	0	967	920	227	69	85	31	0	0	0.08
2	null	90	280	276	56	66	85	27	0	187	180	47	69	84	30	0	0	0.859
3	-0.31	100	2002	1943	472	66	74	27	0	2864	2736	560	72	82	32	0	0	-0.528
4	-0.16	100	838	814	227	59	70	26	0	799	798	222	74	83	34	0	0	0.104
5	-0.28	100	1951	1818	501	65	69	27	0	2700	2497	709	71	76	32	0	0	-0.479
6	-0.5	100	553	520	156	68	73	29	0	570	551	175	70	78	32	0	0	-0.044
7	null	80	264	264	80	69	80	29	0	122	130	52	68	77	29	0	0	1.852
8	null	100	428	413	134	72	83	30	0	139	149	65	74	81	34	0	0	2.453
9	-0.1	90	1096	1100	197	69	74	28	0	1087	1035	219	71	77	32	0	0	0.016
10	-0.07	100	1021	921	341	70	74	28	0	953	879	349	71	77	30	0	0	0.109
11	-0.01	100	6070	5153	1936	68	79	32	0	7759	6830	2277	79	88	34	0	0	-0.356
12	-0.09	80	515	511	112	66	78	27	0	350	344	83	78	89	34	0	0	0.723
13	0.58	100	1136	1096	226	66	79	29	0	621	601	183	75	86	34	0	0	0.971
14	-0.01	100	1628	1427	675	71	83	31	0	1696	1456	670	76	88	34	0	0	-0.057
15	-0.2	100	2284	2129	553	69	74	30	0	3030	2795	753	77	84	38	0	0	-0.415
16	-0.17	100	509	493	157	68	77	29	0	369	368	139	78	89	38	0	0	0.6
17	-0.02	110	1463	1402	341	61	67	26	0	1503	1416	449	69	74	33	0	0	-0.033
18	null	70	176	177	93	63	71	27	0	106	109	47	68	72	32	0	0	1.572
19	-0.54	110	626	658	292	60	65	26	0	730	749	375	72	77	33	0	0	-0.217
20	null	110	397	409	112	70	75	30	0	108	113	41	76	85	34	0	0	3.353

Total number of rows: 22176

Table truncated, full table size 1499 Kbytes.

Supplementary data files not provided

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