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Sample GSM124607

Query DataSets for GSM124607

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02556, rep2

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02556

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, T+, J-, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is tender (T+), not juicier (J-) and of average flavor (Fm).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.46	90	1020	1034	156	144	180	51	0	636	648	141	93	113	39	0	0	0.69
2	null	90	364	395	117	119	143	42	0	180	173	50	97	112	39	0	0	1.562
3	0.04	110	2321	2285	344	113	121	43	0	2541	2581	440	99	110	45	0	0	-0.145
4	0.14	100	787	768	157	106	112	43	0	600	597	167	86	97	36	0	0	0.406
5	0.07	110	3163	2770	1010	100	106	41	0	3542	3136	956	87	98	37	0	0	-0.174
6	-0.07	90	708	675	143	89	99	33	0	636	628	138	85	97	36	0	0	0.168
7	null	90	293	280	57	81	87	29	0	129	142	62	86	92	36	0	0	2.302
8	null	100	440	440	130	83	87	31	0	157	163	78	78	88	37	0	0	2.176
9	0.2	100	1044	997	278	88	94	31	0	860	824	271	85	87	36	0	0	0.303
10	0.01	100	1524	1447	458	94	101	35	0	1608	1415	531	83	86	35	0	0	-0.093
11	0.37	110	7712	6910	2021	92	100	34	0	7401	6934	1740	87	92	36	0	0	0.059
12	0.03	90	483	503	121	86	93	34	0	341	354	96	85	92	32	0	0	0.633
13	0.77	110	1208	1176	223	92	115	34	0	648	658	161	84	104	32	0	0	0.985
14	0.34	90	2372	2291	398	83	97	32	0	2081	2047	314	84	92	35	0	0	0.197
15	-0.07	100	2470	2264	670	80	93	32	0	3009	2864	749	86	99	36	0	0	-0.29
16	0.14	100	613	611	170	79	92	31	0	443	465	149	78	92	31	0	0	0.549
17	0.26	100	1605	1582	442	82	88	32	0	1412	1369	342	84	89	35	0	0	0.198
18	null	80	224	243	71	80	86	30	0	125	124	41	84	87	36	0	0	1.812
19	-0.05	100	1387	1292	366	77	83	32	0	1526	1492	431	81	86	36	0	0	-0.142
20	null	100	367	373	86	74	83	29	0	143	150	58	87	92	38	0	0	2.387

Total number of rows: 22176

Table truncated, full table size 1513 Kbytes.

Supplementary data files not provided

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