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Sample GSM124596

Query DataSets for GSM124596

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02548, rep3

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02548

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, T+, J+, F+, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is tender (T+), juicier (J+) and tasty (F+).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.32	90	915	922	174	122	160	48	0	427	445	111	75	94	35	0	0	1.172
2	null	110	408	410	86	135	167	59	0	167	166	66	79	96	34	0	0	1.633
3	0.18	110	1393	1371	236	132	146	52	0	887	879	201	81	91	37	0	0	0.646
4	0.16	100	879	888	176	138	146	52	0	447	444	119	73	78	33	0	0	0.986
5	0.32	110	2192	1937	761	134	145	52	0	1404	1272	389	74	80	33	0	0	0.63
6	0.22	100	663	667	197	125	138	50	0	271	276	104	80	83	32	0	0	1.494
7	null	90	353	364	107	127	132	49	0	125	129	49	72	79	26	0	0	2.092
8	null	90	685	683	132	121	131	48	0	168	171	61	80	84	36	0	0	2.68
9	0.83	90	1817	1702	342	134	147	50	0	721	772	163	82	91	35	0	0	1.397
10	-0.06	90	793	774	222	142	154	54	0	461	443	101	79	89	33	0	0	0.769
11	0.38	110	5153	4983	1039	123	136	50	0	3671	3604	569	75	83	32	0	0	0.484
12	null	100	537	512	164	100	127	44	0	204	210	71	75	81	30	0	0	1.76
13	0.89	110	1033	995	175	100	117	42	0	322	321	80	76	90	31	0	0	1.923
14	0.19	100	1393	1281	411	97	141	39	0	903	842	293	73	94	34	0	0	0.643
15	-0.11	100	1740	1675	434	88	142	38	0	1589	1486	444	75	105	34	0	0	0.126
16	0.26	110	568	556	149	91	111	39	0	212	215	78	75	88	31	0	0	1.8
17	0.22	110	1332	1303	332	82	88	34	0	851	809	260	79	85	33	0	0	0.695
18	null	90	318	314	78	88	96	40	0	99	103	35	77	86	32	0	0	3.386
19	0.08	100	1353	1264	358	89	101	36	0	965	968	241	74	94	34	0	0	0.504
20	null	120	417	428	99	83	91	36	0	107	113	54	70	86	29	0	0	3.174

Total number of rows: 22176

Table truncated, full table size 1478 Kbytes.

Supplementary data files not provided

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