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Sample GSM124595

Query DataSets for GSM124595

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02548, rep2

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02548

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, T+, J+, F+, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is tender (T+), juicier (J+) and tasty (F+).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.66	100	1129	1082	300	105	158	40	0	860	818	228	90	114	39	0	0	0.411
2	null	90	610	661	277	117	179	43	0	211	204	51	81	98	35	0	-100	1.923
3	-0.05	110	1622	1516	479	98	151	41	0	2369	2303	460	78	91	32	0	0	-0.588
4	0.37	90	929	994	365	104	176	49	0	818	854	148	82	95	37	0	0	0.165
5	0.06	100	2181	2055	758	99	191	51	0	3111	2870	876	80	94	37	0	0	-0.542
6	null	130	549	587	263	101	231	61	0	433	391	190	82	101	37	0	-100	0.352
7	null	150	600	707	539	107	257	73	0	90	100	53	80	101	37	0	-100	5.624
8	null	50	496	510	189	103	212	52	0	117	130	57	86	98	39	0	-100	3.664
9	0.46	100	1286	1450	780	141	205	64	0	1135	1034	406	79	88	35	0	0	0.117
10	null	100	1862	2211	1298	255	672	124	0	776	746	292	76	80	34	0	-50	1.199
11	null	100	4346	5107	2098	298	1553	334	0	4795	4174	1436	85	93	40	0	-50	-0.219
12	null	100	356	366	180	89	931	37	0	263	256	81	80	87	37	0	-50	0.545
13	0.82	100	780	737	182	84	144	35	0	461	464	145	81	86	36	0	0	0.873
14	0.06	100	939	891	372	84	179	38	0	1091	1000	494	81	84	34	0	0	-0.24
15	-0.24	100	1283	1177	368	74	116	28	0	2109	1970	622	84	106	35	0	0	-0.744
16	-0.38	90	341	355	80	85	154	38	0	299	299	97	83	107	37	0	0	0.245
17	-0.01	100	766	693	239	79	100	34	0	875	847	276	77	84	37	0	0	-0.216
18	null	80	184	198	63	80	98	28	0	153	153	71	77	83	35	0	0	0.453
19	-0.19	100	788	724	255	92	109	38	0	1032	966	341	83	87	33	0	0	-0.447
20	null	110	327	334	66	93	108	42	0	135	134	59	83	88	35	0	0	2.17

Total number of rows: 22176

Table truncated, full table size 1484 Kbytes.

Supplementary data files not provided

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