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Sample GSM123990 Query DataSets for GSM123990
Status Public on Dec 31, 2006
Title Muscle_contraction_6h_rep417
Sample type RNA
 
Source name Muscle, contraction injury, 6 hours post-injury, sample 417
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol Injured by 150 in vivo eccentric contractions
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed at 6-hours post-injury and injured tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 30, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 6.5 A 0.971543
AFFX-MurIL10_at 21.2 A 0.354453
AFFX-MurIL4_at 16.7 A 0.195266
AFFX-MurFAS_at 40.2 A 0.147939
AFFX-BioB-5_at 202.9 P 0.001102
AFFX-BioB-M_at 378.6 P 0.000195
AFFX-BioB-3_at 159.3 P 0.000754
AFFX-BioC-5_at 629.8 P 0.00011
AFFX-BioC-3_at 505.8 P 0.000044
AFFX-BioDn-5_at 652.9 P 0.00007
AFFX-BioDn-3_at 3021.1 P 0.000169
AFFX-CreX-5_at 6637.6 P 0.000044
AFFX-CreX-3_at 10287.3 P 0.000044
AFFX-BioB-5_st 5.1 A 0.712257
AFFX-BioB-M_st 50.5 A 0.52976
AFFX-BioB-3_st 16.9 A 0.724854
AFFX-BioC-5_st 13.9 A 0.916408
AFFX-BioC-3_st 7.7 A 0.686277
AFFX-BioDn-5_st 59.7 A 0.195266
AFFX-BioDn-3_st 129.3 P 0.033677

Total number of rows: 12488

Table truncated, full table size 315 Kbytes.




Supplementary data files not provided

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