GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM120187
Query DataSets for GSM120187
Status
Public on Sep 30, 2007
Title
2002-01-10_2399-100
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 100 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 100 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
-0.07108134
0.849021435
FALSE
-0.07108134
E. coli control
-0.125369802
0.749255955
FALSE
-0.125369802
empty
0.718752384
TRUE
-0.143420711
Human Control
0.002783531
1.006429911
FALSE
0.002783531
Lambda Control
-0.022350071
0.949838877
FALSE
-0.022350071
n1
0.000721922
1.001663685
FALSE
0.000721922
n2
-0.012620273
0.971358895
FALSE
-0.012620273
p1
-0.009462189
0.978448153
FALSE
-0.009462189
p2
0.002504958
1.005784512
FALSE
0.002504958
Phi174 Control
-0.139614955
0.725078523
FALSE
-0.139614955
YAL001C
0.02312753
1.05469656
FALSE
0.02312753
YAL002W
0.008556257
1.019896865
FALSE
0.008556257
YAL003W
0.046108834
1.11201036
FALSE
0.046108834
YAL004W
-0.110344805
0.77563107
FALSE
-0.110344805
YAL005C
0.04930649
1.120228171
FALSE
0.04930649
YAL007C
0.079195239
1.200038672
FALSE
0.079195239
YAL008W
0.154551059
1.427417636
FALSE
0.154551059
YAL009W
0.052056599
1.12734437
FALSE
0.052056599
YAL010C
-0.021071296
0.952639759
FALSE
-0.021071296
YAL011W
-0.135943621
0.731234014
FALSE
-0.135943621
Total number of rows:
6228
Table truncated, full table size
306 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120187.gpr.gz
500.3 Kb
(ftp)
(http)
GPR
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
