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| Status |
Public on Jul 12, 2013 |
| Title |
23A1 |
| Sample type |
SRA |
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| Source name |
23A1
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| Organism |
Escherichia coli str. K-12 substr. MG1655 |
| Characteristics |
genotype/variation: ydcR (b1439) MUTANT
strain: K-12
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| Extracted molecule |
total RNA |
| Extraction protocol |
DNA was extracted in the same manner as described by McNulty et al. (PMID: 22030749).
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina MiSeq |
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| Data processing |
Illumina Casava software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to Escherichia coli str. K-12 substr. MG1655, complete genome using bowtie2 version 2.0.5 with default parameters.
ecoli NC_000913.2
Genome_build: ASM584v1
Supplementary_files_format_and_content: tab-delimited text files include count values for each Sample.
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| Submission date |
Jul 12, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Kristof Engelen |
| Organization name |
KULeuven
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| Lab |
CMPG
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| Street address |
Kasteelpark Arenberg 20
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| City |
Leuven |
| ZIP/Postal code |
3001 |
| Country |
Belgium |
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| Platform ID |
GPL17439 |
| Series (2) |
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| Relations |
| SRA |
SRX322077 |
| BioSample |
SAMN02231975 |
| Supplementary data files not provided |
SRA Run Selector |
| Processed data are available on Series record |
| Raw data are available in SRA |
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