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Sample GSM115139 Query DataSets for GSM115139
Status Public on Aug 30, 2006
Title Adenoma VUMC_C018_b16_s32
Sample type genomic
 
Channel 1
Source name colon
Organism Homo sapiens
Characteristics adenoma
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name reference DNA
Organism Homo sapiens
Characteristics Pooled DNA from the blood of 10 normal individuals
Extracted molecule genomic DNA
Label Cy5
 
 
Description protocols available via the VUMC MACF website
Data processing Using ImaGene as described in Carvalho et al (2004) J.Clin.Path., vol. 57, 644-646. Normalization was done to the mode value of the log2ratio's.
 
Submission date Jun 20, 2006
Last update date Aug 30, 2006
Contact name Daoud Sie
E-mail(s) [email protected]
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL3442
Series (1)
GSE5051 Cross-Platform Array Comparative Genomic Hybridization (array CGH) Meta-Analysis

Data table header descriptions
ID_REF
Signal Median CH1 Spot signal in channel 1 (Cy3)
Background Median CH1 Background signal channel 1 (Cy3)
Signal Median CH2 Spot signal in channel 2 (Cy5)
Background Median CH2 Background signal channel 2 (Cy5)
Log2ratio
Flag A flag to highlight spots that suffer from poor printing and other experimental artefacts (0 acceptable; 2 not acceptable)
VALUE Normalized value of the log2ratio, features with flag 2 are excluded

Data table
ID_REF Signal Median CH1 Background Median CH1 Signal Median CH2 Background Median CH2 Log2ratio Flag VALUE
1 5686 0 7904 0 -0.475168848 0 -0.228
2 6270.5 11 8691 0 -0.473474764 0 -0.228
3 5707 0 7860 0 -0.461796749 0 -0.228
4 6817.5 14.5 9620 0 -0.499865805 0 -0.258
5 6948.5 17 9864 0 -0.50900521 0 -0.258
6 6625 0 9391.5 0 -0.503435147 0 -0.258
7 5798 0 7636.5 0 -0.397356233 0 -0.152
8 5945 13.5 7490 0 -0.336568729 0 -0.152
9 5744 23 8036 0 -0.49021022 0 -0.152
10 3251 0 4487 0 -0.464867628 0 -0.13
11 3340 16.5 4312 0 -0.375653824 0 -0.13
12 3279 26.5 4161 0 -0.355381231 0 -0.13
13 6084 25 7105 0 -0.229754944 0 0.015
14 6493 25 7557 0 -0.224493944 0 0.015
15 5992 30 7601.5 0 -0.350487758 0 0.015
16 4278 14.5 5547 0 -0.379669469 0 -0.117
17 4607 21.5 5529 0 -0.269939519 0 -0.117
18 4228 17 5413 0 -0.362265513 0 -0.117
19 5180 0 7190 0 -0.473039673 0 -0.228
20 5225.5 3.5 7202 0 -0.463795142 0 -0.228

Total number of rows: 15552

Table truncated, full table size 632 Kbytes.




Supplementary data files not provided
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