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Sample GSM115130 Query DataSets for GSM115130
Status Public on Aug 30, 2006
Title Adenoma VUMC_C009_b17_s35
Sample type genomic
 
Channel 1
Source name colon
Organism Homo sapiens
Characteristics adenoma
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name reference DNA
Organism Homo sapiens
Characteristics Pooled DNA from the blood of 10 normal individuals
Extracted molecule genomic DNA
Label Cy5
 
 
Description protocols available via the VUMC MACF website
Data processing Using ImaGene as described in Carvalho et al (2004) J.Clin.Path., vol. 57, 644-646. Normalization was done to the mode value of the log2ratio's.
 
Submission date Jun 20, 2006
Last update date Aug 30, 2006
Contact name Daoud Sie
E-mail(s) [email protected]
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL3442
Series (1)
GSE5051 Cross-Platform Array Comparative Genomic Hybridization (array CGH) Meta-Analysis

Data table header descriptions
ID_REF
Signal Median CH1 Spot signal in channel 1 (Cy3)
Background Median CH1 Background signal channel 1 (Cy3)
Signal Median CH2 Spot signal in channel 2 (Cy5)
Background Median CH2 Background signal channel 2 (Cy5)
Log2ratio
Flag A flag to highlight spots that suffer from poor printing and other experimental artefacts (0 acceptable; 2 not acceptable)
VALUE Normalized value of the log2ratio, features with flag 2 are excluded

Data table
ID_REF Signal Median CH1 Background Median CH1 Signal Median CH2 Background Median CH2 Log2ratio Flag VALUE
1 8245 88 11960 210 -0.5265502 0 -0.055
2 9239 79 11977 225 -0.359486798 0 -0.055
3 8973 89.5 12348 250 -0.445568466 0 -0.055
4 9482 124 12514 248 -0.390392722 0 -0.041
5 8874 116 12895.5 227 -0.532572359 0 -0.041
6 8951 120 12130 218 -0.43176694 0 -0.041
7 7199 75.5 9153 189 -0.331556392 0 0.15
8 7676 115.5 9128 190.5 -0.241389689 0 0.15
9 8182 138 9317.5 175 -0.18467564 0 0.15
10 4350 166 4125 184 0.086321102 0 0.337
11 4105.5 171 5135.5 185.5 -0.331248217 0 0.337
12 4739 108 4956 149 -0.053813046 0 0.337
13 7436 138 8133 167 -0.126354329 0 0.265
14 7330 92 8130 155 -0.139893411 0 0.265
15 7558 101 8099.5 142 -0.09371991 0 0.265
16 6157.5 99 6181.5 143.5 0.00488989 0 0.378
17 5717 80 6072 144.5 -0.07249619 0 0.378
18 6007.5 92 6089.5 122 -0.012626546 0 0.378
19 7351.5 85 10168 247.5 -0.449152196 0 -0.092
20 7155.5 87 10074 194 -0.483106947 0 -0.092

Total number of rows: 15552

Table truncated, full table size 692 Kbytes.




Supplementary data files not provided
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