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Sample GSM115125 Query DataSets for GSM115125
Status Public on Aug 30, 2006
Title Carcinoma VUMC_C004_b16_s49
Sample type genomic
 
Channel 1
Source name colon
Organism Homo sapiens
Characteristics carcinoma
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name reference DNA
Organism Homo sapiens
Characteristics Pooled DNA from the blood of 10 normal individuals
Extracted molecule genomic DNA
Label Cy5
 
 
Description protocols available via the VUMC MACF website
Data processing Using ImaGene as described in Carvalho et al (2004) J.Clin.Path., vol. 57, 644-646. Normalization was done to the mode value of the log2ratio's.
 
Submission date Jun 20, 2006
Last update date Aug 30, 2006
Contact name Daoud Sie
E-mail(s) [email protected]
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL3442
Series (1)
GSE5051 Cross-Platform Array Comparative Genomic Hybridization (array CGH) Meta-Analysis

Data table header descriptions
ID_REF
Signal Median CH1 Spot signal in channel 1 (Cy3)
Background Median CH1 Background signal channel 1 (Cy3)
Signal Median CH2 Spot signal in channel 2 (Cy5)
Background Median CH2 Background signal channel 2 (Cy5)
Log2ratio
Flag A flag to highlight spots that suffer from poor printing and other experimental artefacts (0 acceptable; 2 not acceptable)
VALUE Normalized value of the log2ratio, features with flag 2 are excluded

Data table
ID_REF Signal Median CH1 Background Median CH1 Signal Median CH2 Background Median CH2 Log2ratio Flag VALUE
1 5164.5 486 4543 116 0.07971668 0 0.227
2 5046 480 4520 119 0.053099488 0 0.227
3 5417.5 474 4833.5 119 0.068428059 0 0.227
4 5836.5 457.5 5495.5 119 0.000670678 0 0.16
5 5631 437 5269.5 120 0.012413656 0 0.16
6 5551 454 5253 122 -0.009591672 0 0.16
7 5108 437.5 4685 119 0.032646146 0 0.205
8 4879 395 4464 120 0.045762175 0 0.205
9 4839 388 4421 119 0.049121976 0 0.205
10 2906 387 2671 120 -0.018211777 0 0.141
11 2904 375 2652 120 -0.001710368 0 0.141
12 2804 354 2628 120 -0.033755599 0 0.141
13 5326.5 366 4909 120 0.050761111 0 0.221
14 5552 415 5015 121 0.069911972 0 0.221
15 5837 440 5290.5 121 0.062132939 0 0.221
16 4132 485.5 3587 121 0.07324074 0 0.232
17 3988.5 451.5 3393.5 119 0.111251588 0 0.232
18 4054 428 3641 121 0.042803496 0 0.232
19 4814 496 4264.5 116 0.057773457 0 0.197
20 4822 487 4350 119 0.035033308 0 0.197

Total number of rows: 15552

Table truncated, full table size 676 Kbytes.




Supplementary data files not provided
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