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Sample GSM115122 Query DataSets for GSM115122
Status Public on Aug 30, 2006
Title Adenoma VUMC_C001_b16_s52
Sample type genomic
 
Channel 1
Source name colon
Organism Homo sapiens
Characteristics adenoma
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name reference DNA
Organism Homo sapiens
Characteristics Pooled DNA from the blood of 10 normal individuals
Extracted molecule genomic DNA
Label Cy5
 
 
Description protocols available via the VUMC MACF website
Data processing Using ImaGene as described in Carvalho et al (2004) J.Clin.Path., vol. 57, 644-646. Normalization was done to the mode value of the log2ratio's.
 
Submission date Jun 20, 2006
Last update date Aug 30, 2006
Contact name Daoud Sie
E-mail(s) [email protected]
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL3442
Series (1)
GSE5051 Cross-Platform Array Comparative Genomic Hybridization (array CGH) Meta-Analysis

Data table header descriptions
ID_REF
Signal Median CH1 Spot signal in channel 1 (Cy3)
Background Median CH1 Background signal channel 1 (Cy3)
Signal Median CH2 Spot signal in channel 2 (Cy5)
Background Median CH2 Background signal channel 2 (Cy5)
Log2ratio
Flag A flag to highlight spots that suffer from poor printing and other experimental artefacts (0 acceptable; 2 not acceptable)
VALUE Normalized value of the log2ratio, features with flag 2 are excluded

Data table
ID_REF Signal Median CH1 Background Median CH1 Signal Median CH2 Background Median CH2 Log2ratio Flag VALUE
1 4110 343 3704 127 0.074665915 0 -0.324
2 4139 333 3581 125 0.139172344 0 -0.324
3 4441 321 4044 123.5 0.071606678 0 -0.324
4 6402.5 318 4678.5 123 0.417529304 0 0.019
5 6105 309 4372 127 0.449293041 0 0.019
6 6042 296 4549 126 0.377532751 0 0.019
7 4069 296.5 3761 127 0.053962481 0 -0.345
8 4134 314 3805 126 0.054258962 0 -0.345
9 4114 312 3771 128 0.061631537 0 -0.345
10 3103 322 2297.5 130 0.359571751 0 -0.018
11 3139 335.5 2252 130 0.401804414 0 -0.018
12 3084 335 2239 128 0.380980328 0 -0.018
13 4265 305 3987.5 126 0.036339059 0 -0.337
14 4405 293 3999 126 0.086388763 0 -0.337
15 4446.5 293 4106 127 0.061921655 0 -0.337
16 4082 283.5 2929.5 125 0.437686238 0 0.028
17 3955 286.5 2856 127 0.426817891 0 0.028
18 3912 288 2869 125 0.401302474 0 0.028
19 3864 333 3549 124 0.043972833 0 -0.293
20 4014.5 324 3492 127 0.133209785 0 -0.293

Total number of rows: 15552

Table truncated, full table size 665 Kbytes.




Supplementary data files not provided
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