|
| Status |
Public on May 24, 2016 |
| Title |
TCL Patient No.6, lymph node sample |
| Sample type |
genomic |
| |
|
| Source name |
lymph node 31, at diagnosis
|
| Organism |
Homo sapiens |
| Characteristics |
tumor: T cell lymphoma
Sex: Female
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using Wizard Genomic DNA Purificaiton Kit (Promega, WI, USA) according to the manufacturer's protocol.
|
| Label |
C-Bio and A-DNP
|
| Label protocol |
standard Illumina protocol
|
| |
|
| Hybridization protocol |
standard Illumina protocol
|
| Scan protocol |
standard Illumina protocol
|
| Description |
Genomic DNA extracted from lymph node tissue was genotyped using Human610W-Quad v1.0 Genotyping BeadChips (Illumina).
|
| Data processing |
Regions were determined based on the Log R Ratio (LRR) of the signal intensity and B allele frequency (BAF) of genotyping call using platform of GenomeStudio V2011.1 with CnvPartition 3.1.6 (Illumina).
|
| |
|
| Submission date |
May 24, 2013 |
| Last update date |
May 24, 2016 |
| Contact name |
Fan YANG |
| E-mail(s) |
[email protected]
|
| Organization name |
Shanghai Institute of Hematology
|
| Street address |
197, Rui Jin Er Road
|
| City |
Shanghai |
| ZIP/Postal code |
200025 |
| Country |
China |
| |
|
| Platform ID |
GPL8887 |
| Series (1) |
| GSE47357 |
Normalization of whole-genome SNP data from non-Hodgkin lymphoma patients for copy number variation. |
|
