|
| Status |
Public on Jan 09, 2014 |
| Title |
DNA methylation status of MDS-17 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: MDS
tissue: bone marrow
age: 73 years old
fab: RAEB
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using a standard phenol–chloroform method
|
| Label |
Cy5
|
| Label protocol |
Followed standard Agilent protocol
|
| |
|
| Channel 2 |
| Source name |
whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
age: 42 years old
disease state: control
tissue: blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using a standard phenol–chloroform method
|
| Label |
Cy3
|
| Label protocol |
Followed standard Agilent protocol
|
| |
|
| |
| Hybridization protocol |
Followed standard Agilent protocol
|
| Scan protocol |
Scanned on an Agilent Technologies Scanner G2505B US23502362
Images were quantified using Agilent Feature Extraction Software (version 9.1.3.1).
|
| Description |
13 of 19. human MDS patient
|
| Data processing |
The ratios of hybridization intensities were adjusted by using Lowess normalization.
|
| |
|
| Submission date |
Apr 15, 2013 |
| Last update date |
Jan 09, 2014 |
| Contact name |
Yue Lu |
| Organization name |
MD Anderson Cancer Center
|
| Department |
Epigenetics and Molecular Carcinogenesis
|
| Street address |
1808 Park Road 1C
|
| City |
Smithville |
| State/province |
TX |
| ZIP/Postal code |
78957 |
| Country |
USA |
| |
|
| Platform ID |
GPL9886 |
| Series (2) |
| GSE46063 |
Age-related epigenetic drift in the pathogenesis of MDS and AML part 1 |
| GSE46067 |
Age-related epigenetic drift in the pathogenesis of MDS and AML |
|
