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Sample GSM1118703 Query DataSets for GSM1118703
Status Public on Apr 22, 2013
Title LP_300_4w_429_BRBZ300_10009_Liver
Sample type RNA
 
Source name LP_300_4w_BRBZ300_Liver
Organism Rattus norvegicus
Characteristics array type: HT_Rat230_PM
amount to core: 50
units of amount: ul
od260: 5.331
od280: 2.925
ratio: 1.82
dilution: 1:10
rna integrity number: 9.5
bioanalyzer results: Excellent
sample preservation: RNA Later
strain or line: F344/DuCrl
ncbi taxonomy id: 10114
individual: 429
developmental state: Adult
sacrifice method: Pentobarbital, Exsanguinated
Sex: Male
age: 12
units of age: Weeks
tissue: Liver
tissue harvest methods: Slices from each of the lobes were pooled together for microarray analysis
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, L. Pluta, [email protected], 9195581357
Treatment protocol in vivo Treatment: Bromobenzene, Treatment Repeat: 7, Units of Treatment Repeat: Days/Week, Treatment Duration: 4, Units of Duration: Weeks, Treatment Time: 1, Units of Treatment Time: exposure/day, Vehicle for Chemical: Corn Oil, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 300, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description LP_300_4w_429_BRBZ300_10009_Liver_(HT_Rat230_PM)_H02: 1470 rats were used in this study: 6 chemicals, 4 time points, and 6 dose groups (including control). 10 animals per group and 5 extra control animals. Timepoints were 5d, 2w, 4w, and 13 weeks. Doses varied with compound (Tribromobenzene: 0, 2.5, 5, 10, 25, 75; Bromobenzene: 0, 25, 100, 200, 300, 400; Tetrachlorophenol: 0, 10, 25, 50, 100, 200; Methylenebis(N,N-dimethyl)benzen amine: 0, 50, 200, 375, 500, 750; Nitrosodiphenylamine: 0, 250, 1000, 2000, 3000, 4000; Hydrazobenzene: 0, 5, 20, 80, 200, 300). Animals were dosed through gavage or diet. Two of the protocols had female rats and the rest were male rats (see protocols). F344 and Sprague Dawley rats were used.
Data processing RMA normalization with Partek software program
 
Submission date Apr 09, 2013
Last update date Apr 23, 2013
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL16985
Series (1)
GSE45892 Temporal Concordance between Apical and Transcriptional Points-of-Departure for Chemical Risk Assessment

Data table header descriptions
ID_REF
VALUE signal

Data table
ID_REF VALUE
1367452_PM_at 9.42436
1367453_PM_at 8.68859
1367454_PM_at 9.25436
1367455_PM_at 10.3798
1367456_PM_at 10.774
1367457_PM_at 7.60349
1367458_PM_at 6.44942
1367459_PM_at 11.1892
1367460_PM_at 9.97601
1367461_PM_at 8.31887
1367462_PM_at 9.38442
1367463_PM_at 9.92077
1367464_PM_at 8.88967
1367465_PM_at 9.63663
1367466_PM_at 7.99727
1367467_PM_at 10.1161
1367468_PM_at 9.1088
1367469_PM_at 10.4308
1367470_PM_at 8.5786
1367471_PM_at 8.42989

Total number of rows: 31139

Table truncated, full table size 669 Kbytes.




Supplementary file Size Download File type/resource
GSM1118703_LP_300_4w_429_BRBZ300_10009_Liver_HT_Rat230_PM_H02.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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