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Sample GSM1118696 Query DataSets for GSM1118696
Status Public on Apr 22, 2013
Title LP_300_2w_364_BRBZ300_10009_Liver
Sample type RNA
 
Source name LP_300_2w_BRBZ300_Liver
Organism Rattus norvegicus
Characteristics array type: HT_Rat230_PM
amount to core: 50
units of amount: ul
od260: 7.816
od280: 3.907
dilution: 1:10
rna integrity number: 9.1
bioanalyzer results: Excellent
sample preservation: RNA Later
strain or line: F344/DuCrl
ncbi taxonomy id: 10114
individual: 364
developmental state: Adult
sacrifice method: Pentobarbital, Exsanguinated
Sex: Male
age: 10
units of age: Weeks
tissue: Liver
tissue harvest methods: Slices from each of the lobes were pooled together for microarray analysis
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, L. Pluta, [email protected], 9195581357
Treatment protocol in vivo Treatment: Bromobenzene, Treatment Repeat: 7, Units of Treatment Repeat: Days/Week, Treatment Duration: 2, Units of Duration: Weeks, Treatment Time: 1, Units of Treatment Time: exposure/day, Vehicle for Chemical: Corn Oil, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 300, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description LP_300_2w_364_BRBZ300_10009_Liver_(HT_Rat230_PM)_E06_2: 1470 rats were used in this study: 6 chemicals, 4 time points, and 6 dose groups (including control). 10 animals per group and 5 extra control animals. Timepoints were 5d, 2w, 4w, and 13 weeks. Doses varied with compound (Tribromobenzene: 0, 2.5, 5, 10, 25, 75; Bromobenzene: 0, 25, 100, 200, 300, 400; Tetrachlorophenol: 0, 10, 25, 50, 100, 200; Methylenebis(N,N-dimethyl)benzen amine: 0, 50, 200, 375, 500, 750; Nitrosodiphenylamine: 0, 250, 1000, 2000, 3000, 4000; Hydrazobenzene: 0, 5, 20, 80, 200, 300). Animals were dosed through gavage or diet. Two of the protocols had female rats and the rest were male rats (see protocols). F344 and Sprague Dawley rats were used.
Data processing RMA normalization with Partek software program
 
Submission date Apr 09, 2013
Last update date Apr 23, 2013
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL16985
Series (1)
GSE45892 Temporal Concordance between Apical and Transcriptional Points-of-Departure for Chemical Risk Assessment

Data table header descriptions
ID_REF
VALUE signal

Data table
ID_REF VALUE
1367452_PM_at 9.26088
1367453_PM_at 8.66108
1367454_PM_at 9.13964
1367455_PM_at 10.5357
1367456_PM_at 10.6299
1367457_PM_at 7.52974
1367458_PM_at 6.90727
1367459_PM_at 11.2001
1367460_PM_at 10.0139
1367461_PM_at 7.8486
1367462_PM_at 9.7003
1367463_PM_at 10.2806
1367464_PM_at 8.98489
1367465_PM_at 9.80686
1367466_PM_at 8.00555
1367467_PM_at 9.947
1367468_PM_at 9.3158
1367469_PM_at 10.1723
1367470_PM_at 8.40515
1367471_PM_at 8.84205

Total number of rows: 31139

Table truncated, full table size 669 Kbytes.




Supplementary file Size Download File type/resource
GSM1118696_LP_300_2w_364_BRBZ300_10009_Liver_HT_Rat230_PM_E06_2.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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