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Sample GSM108539 Query DataSets for GSM108539
Status Public on May 12, 2006
Title 26B
Sample type RNA
 
Source name wild-type postnatal day 1 bladder
Organism Mus musculus
Characteristics gene reported: wild-type
strain: FVB/N
sex: Male
developmental stage: postnatal day 1
theiler stage: 27
somite count: NA
developmental landmark: NA
Treatment protocol pool size: N/A
Pooled sample: no
Dissection Method: whole bladder
FVB/N female mice are time-mated to control males. Pregnant FVB/N mice are euthanized by standard carbon dioxide asphyxiation. All fetuses and newborn mice are killed by decapitation with a scalpel. Tissues are harvested and used whole or placed in OCT in a mold, frozen and stored at -80 °C. Blocks are sectioned, stained and used for laser capture micro-dissection.
Extracted molecule total RNA
Extraction protocol Qiagen: RNeasy
Label Biotin
Label protocol -
 
Hybridization protocol Affymetrix standard protocol
Amount labeled target hybridization to array: 10 ug
Scan protocol -
Description >> Amplification protocol <<
Target Amplified manufacturer/kit: Epicentre
Target Amplified protocol: Potter protocols
Rounds of amplification: 1
URL: http://gudmap.hgu.mrc.ac.uk/gudmap/pages/mic_submission.html?id=GUDMAP:2200
Data processing Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs GCOS Tgt value: 1500
 
Submission date May 12, 2006
Last update date Aug 28, 2018
Contact name GUDMAP Developers
E-mail(s) [email protected]
Phone +44 131 651 8500
Organization name IGMM MRC Human Genetics Unit
Lab GUDMAP Database Group
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Platform ID GPL1261
Series (1)
GSE4816 Gene expression profiles of the P1 bladder isolated from SMAA or SMAGA (Acta2 or Actg2) transgenic and wild type mice. (GUDMAP Series ID: 2)
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 865.61 P 0.000390
AFFX-BioB-M_at 1367.86 P 0.000044
AFFX-BioB-3_at 813.77 P 0.000195
AFFX-BioC-5_at 2843.05 P 0.000044
AFFX-BioC-3_at 3327.44 P 0.000044
AFFX-BioDn-5_at 4657.34 P 0.000044
AFFX-BioDn-3_at 9868.23 P 0.000052
AFFX-CreX-5_at 28674.39 P 0.000044
AFFX-CreX-3_at 33801.99 P 0.000044
AFFX-DapX-5_at 5.85 A 0.574038
AFFX-DapX-M_at 24.60 A 0.544587
AFFX-DapX-3_at 8.48 A 0.937071
AFFX-LysX-5_at 20.89 A 0.724854
AFFX-LysX-M_at 65.78 A 0.544587
AFFX-LysX-3_at 73.55 M 0.054152
AFFX-PheX-5_at 4.11 A 0.897835
AFFX-PheX-M_at 2.68 A 0.963431
AFFX-PheX-3_at 35.55 A 0.440646
AFFX-ThrX-5_at 48.64 A 0.300606
AFFX-ThrX-M_at 5.65 A 0.724854

Total number of rows: 45101

Table truncated, full table size 1293 Kbytes.




Supplementary file Size Download File type/resource
GSM108539.CEL.gz 3.7 Mb (ftp)(http) CEL

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