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Sample GSM1070618 Query DataSets for GSM1070618
Status Public on Jan 26, 2013
Title TOV112D - proliferating-rep1
Sample type RNA
 
Source name TOV112D - proliferating
Organism Homo sapiens
Characteristics cell type: Exponentially proliferating ovarian cancer cells
cell line: TOV112D
Treatment protocol No treatment
Growth protocol Ovarian cancer cell lines were plated and harvested when 50-80% confluent. RNA was extracted and hybridized on Affymetrix microarrays. At least 3 biological repeats were performed for each cell line.
Extracted molecule total RNA
Extraction protocol QIAgen Rneasy was used to extract RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
 
Hybridization protocol Hybridization was for 16hrs andaccording to the standard Affymetrix protocol
Scan protocol GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450 using standard Fluidics Protocol ((Fluidics protocol FS450_007)). GeneChips were scanned using the Affymetrix 7G Scanner
Data processing The data was gc-rma normalised using the R Bioconductor package affy.
 
Submission date Jan 25, 2013
Last update date Sep 01, 2016
Contact name Karen Elizabeth Sheppard
E-mail(s) [email protected]
Phone 61 3 9656 3758
Fax 61 3 96563738
Organization name Perter MacCallum Cancer Centre
Department Research
Street address St Andrews Place
City Melbourne
State/province Victoria
ZIP/Postal code 3008
Country Australia
 
Platform ID GPL6244
Series (1)
GSE43765 Expression data from exponentially proliferating ovarian cancer cell lines
Relations
Reanalyzed by GSE86357

Data table header descriptions
ID_REF
VALUE Log base 2 gcrma normalised expression value

Data table
ID_REF VALUE
7892501 8.097205344
7892502 5.968422596
7892503 3.749387632
7892504 10.3570458
7892505 2.96790784
7892506 4.362540751
7892507 3.519911299
7892508 6.241836135
7892509 12.9204101
7892510 3.657280439
7892511 2.868814404
7892512 7.584775576
7892513 3.747378832
7892514 10.57955237
7892515 9.113551199
7892516 5.599381419
7892517 5.560290174
7892518 3.096248032
7892519 5.259041953
7892520 9.638809201

Total number of rows: 33252

Table truncated, full table size 645 Kbytes.




Supplementary file Size Download File type/resource
GSM1070618_1_TOV112D.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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