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Sample GSM1070537 Query DataSets for GSM1070537
Status Public on Jan 26, 2013
Title Caov3 - proliferating-rep3
Sample type RNA
 
Source name Caov3 - proliferating
Organism Homo sapiens
Characteristics cell type: Exponentially proliferating ovarian cancer cells
cell line: Caov3
Treatment protocol No treatment
Growth protocol Ovarian cancer cell lines were plated and harvested when 50-80% confluent. RNA was extracted and hybridized on Affymetrix microarrays. At least 3 biological repeats were performed for each cell line.
Extracted molecule total RNA
Extraction protocol QIAgen Rneasy was used to extract RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
 
Hybridization protocol Hybridization was for 16hrs andaccording to the standard Affymetrix protocol
Scan protocol GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450 using standard Fluidics Protocol ((Fluidics protocol FS450_007)). GeneChips were scanned using the Affymetrix 7G Scanner
Data processing The data was gc-rma normalised using the R Bioconductor package affy.
 
Submission date Jan 25, 2013
Last update date Sep 01, 2016
Contact name Karen Elizabeth Sheppard
E-mail(s) [email protected]
Phone 61 3 9656 3758
Fax 61 3 96563738
Organization name Perter MacCallum Cancer Centre
Department Research
Street address St Andrews Place
City Melbourne
State/province Victoria
ZIP/Postal code 3008
Country Australia
 
Platform ID GPL6244
Series (1)
GSE43765 Expression data from exponentially proliferating ovarian cancer cell lines
Relations
Reanalyzed by GSE86357

Data table header descriptions
ID_REF
VALUE Log base 2 gcrma normalised expression value

Data table
ID_REF VALUE
7892501 7.763426895
7892502 4.726116057
7892503 3.696721495
7892504 9.554570197
7892505 3.28719179
7892506 4.766641435
7892507 5.084845269
7892508 4.146203374
7892509 13.19135239
7892510 4.041755511
7892511 3.521096031
7892512 7.324089594
7892513 3.59393968
7892514 12.22103959
7892515 8.95127664
7892516 6.151479356
7892517 4.891350431
7892518 2.724936421
7892519 5.134965248
7892520 9.286880697

Total number of rows: 33252

Table truncated, full table size 645 Kbytes.




Supplementary file Size Download File type/resource
GSM1070537_3_Caov3.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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