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Sample GSM107034 Query DataSets for GSM107034
Status Public on Mar 05, 2007
Title C57BL/6J periaqueductal gray rep2 (430 2.0 Array)
Sample type RNA
 
Source name periaqueductal gray
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol periaqueductal gray regions were dissected from two C57BL/6J mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male C57BL/6J mouse periaqueductal gray
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Apr 28, 2006
Last update date Mar 05, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE4734 Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE 'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE
1415670_at 1090.31 P 0.003311311
1415671_at 1570 P 0.003311311
1415672_at 1280.1 P 0.003311311
1415673_at 176.62 P 0.01
1415674_a_at 576.61 P 0.004466836
1415675_at 416.78 P 0.004466836
1415676_a_at 1515.81 P 0.003311311
1415677_at 371.51 P 0.003311311
1415678_at 1204.23 P 0.003311311
1415679_at 880.54 P 0.003311311
1415680_at 290.96 P 0.004466836
1415681_at 539.42 P 0.003311311
1415682_at 364.29 P 0.003311311
1415683_at 660.56 P 0.003311311
1415684_at 246.54 P 0.005888437
1415685_at 218.49 P 0.004466836
1415686_at 1168.74 P 0.003311311
1415687_a_at 3031.4 P 0.003311311
1415688_at 627.19 P 0.003311311
1415689_s_at 208.92 P 0.003311311

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary data files not provided
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