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Sample GSM1068389 Query DataSets for GSM1068389
Status Public on May 01, 2013
Title dt_48 weeks_non-fasted_rep_2 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 48 weeks
fasting status: non-fasted
strain: C57BL/6J
diet: D12492
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 44M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 5409.48125 0
ILMN_2721178 1241.25 0
ILMN_3033922 1097.576042 0
ILMN_3092673 3084.675 0
ILMN_2816356 116.54375 0.00125
ILMN_2808939 159.1104167 0
ILMN_2634564 615.5104167 0
ILMN_2737647 71.46875 0.1203
ILMN_2734484 1065.977083 0
ILMN_2952292 126.525 0
ILMN_2699078 52.52291667 0.79198
ILMN_1213681 525.45625 0
ILMN_2735413 62.04895833 0.32206
ILMN_2735415 69.82916667 0.14411
ILMN_2891688 1047.575 0
ILMN_2637698 573.2958333 0
ILMN_2674228 273.9125 0
ILMN_2601546 81.35104167 0.03509
ILMN_1230831 57.828125 0.49248
ILMN_2848071 67.628125 0.17544

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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