NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1065052 Query DataSets for GSM1065052
Status Public on Jan 17, 2013
Title Hypothalamus from HF-fed control rats
Sample type RNA
 
Source name Rat hypothalamus
Organism Rattus norvegicus
Characteristics strain: Wistar
age: 4 months
tissue: Hypothalamus
diet: HF-fed
rats: control rats
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared with the TargetAmp Nano-g Biotin-aRNA Labeling for Illumina System
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Hyp control HF
Data processing The data were normalised using cubic spline normalisation with GenomeStudio (Illumina)
 
Submission date Jan 16, 2013
Last update date Jan 17, 2013
Contact name christophe breton
E-mail(s) [email protected]
Phone +33(0)320436532
Organization name University of Lille 1
Street address Cité Scientifique
City Villeneuve d'Ascq
ZIP/Postal code 59650
Country France
 
Platform ID GPL6101
Series (1)
GSE43547 Genome-wide analysis of hypothalamic gene expression in prenatally undernourished male rat offspring under high fat diet

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1369537 217.5342 0.003636364
ILMN_1358051 181.9544 0.01333333
ILMN_1361746 152.1755 0.3272727
ILMN_1351370 158.2556 0.1709091
ILMN_1357910 151.4619 0.3515151
ILMN_1352975 2010.608 0
ILMN_1368384 199.0458 0.006060606
ILMN_1355285 167.2112 0.06545454
ILMN_1376898 183.0536 0.00969697
ILMN_1368325 307.2897 0.001212121
ILMN_1353563 1239.443 0
ILMN_1348794 124.8553 0.9321212
ILMN_1364273 465.666 0
ILMN_1369433 524.8304 0
ILMN_1349007 510.1098 0
ILMN_1374156 162.7888 0.1090909
ILMN_1360232 1173.347 0
ILMN_1355155 3839.643 0
ILMN_1362563 189.0933 0.008484849
ILMN_1355815 175.0578 0.03151515

Total number of rows: 22523

Table truncated, full table size 652 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap