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Status
Public on Jan 01, 2005
Title
WT Ovule 1
Sample type
RNA
Source name
Genotype: Ws-0, Wild Type; Stage: Unfertilized Ovule; Biological Replica: 1 of 2
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Growth Condition: Plants were grown in a Conviron chamber under continuous light with fluorescent lamps at 20oC and 50% - 70% relative humidity. Experiments were performed as described (Le et. al., 2003, PNAS).
Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.). Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2003, PNAS). cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips. The scanned array images were analyzed using Affymetrix Microarray Suite 5.0 (MAS 5.0) with Keywords = Arabidopsis Keywords = seed development Lot batch = 2003282
Submission date
Sep 24, 2003
Last update date
Aug 28, 2018
Contact name
Bob Goldberg
E-mail(s)
[email protected]
Phone
310-825-3270
Organization name
University of California, Los Angeles
Department
Molecular, Cell and Developmental Biology
Street address
610 Charles E Young Drive East
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL198
Series (1)
GSE680
Transcript Profiling of Arabidopsis Plant Life Cycle
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL
A qualitative measurement indicating if the probe set is detected (Present ; P), not detected (Absent; A), or marginally detected (Marginal; M)
DETECTION P-VALUE
A p-value indicating the significance of the Detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
710.4
P
0.00011
AFFX-BioB-M_at
1556.9
P
0.000052
AFFX-BioB-3_at
1520
P
0.000081
AFFX-BioC-5_at
2260.2
P
0.000044
AFFX-BioC-3_at
1422.7
P
0.000052
AFFX-BioDn-5_at
2078.2
P
0.000052
AFFX-BioDn-3_at
9636
P
0.000044
AFFX-CreX-5_at
20123.3
P
0.000044
AFFX-CreX-3_at
25700.2
P
0.000044
AFFX-DapX-5_at
29.7
A
0.239063
AFFX-DapX-M_at
27.4
A
0.699394
AFFX-DapX-3_at
19.8
A
0.760937
AFFX-LysX-5_at
15.9
A
0.51489
AFFX-LysX-M_at
5.2
A
0.98333
AFFX-LysX-3_at
29.2
A
0.340661
AFFX-PheX-5_at
3.3
A
0.989683
AFFX-PheX-M_at
25
A
0.737173
AFFX-PheX-3_at
18.7
A
0.617401
AFFX-ThrX-5_at
8.5
A
0.814869
AFFX-ThrX-M_at
14.9
A
0.699394
Total number of rows: 22810 Table truncated, full table size 587 Kbytes .Supplementary file
Size
Download
File type/resource
GSM10441.CEL.gz
3.2 Mb
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CEL