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Sample GSM1039603 Query DataSets for GSM1039603
Status Public on May 26, 2013
Title GMP_CB2
Sample type RNA
 
Source name human cord blood progenitor cells
Organism Homo sapiens
Characteristics sorted cell type: granulocyte-monocyte progenitors (GMP)
cell surface expression: Lin- CD34+ CD38+ CD10- CD7- CD135+ CD45RA+
Treatment protocol Lineage-depleted cord blood cells were thawed and flow-sorted.
Extracted molecule total RNA
Extraction protocol RNA was extracted from 2,000-5,000 sorted cells with Trizol reagent.
Label biotin
Label protocol Biotin.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Scanned on a BeadArrayâ„¢ Reader using BeadScan software (v3.2).
Data processing The data were normalized using quantile normalization in R (v2.12.1).
 
Submission date Nov 20, 2012
Last update date May 26, 2013
Contact name Elisa Laurenti
Organization name University of Cambridge
Department Haematology
Lab Laurenti laboratory
Street address Jeffrey Cheah Biomedical Centre
City Cambridge
ZIP/Postal code CB2 0AW
Country United Kingdom
 
Platform ID GPL14951
Series (1)
GSE42414 The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment.

Data table header descriptions
ID_REF
VALUE Quantile normalized and log2 transformed.
DetectionPval

Data table
ID_REF VALUE DetectionPval
ILMN_1762337 6.837240609 0.1206897
ILMN_2055271 9.889311474 0
ILMN_2383229 10.7276371 0
ILMN_1806310 6.676350094 0.1724138
ILMN_1779670 9.615596005 0
ILMN_1717783 6.877769013 0.1172414
ILMN_1814316 11.76216455 0
ILMN_2359168 12.08624696 0
ILMN_1731507 8.566475249 0
ILMN_1787689 7.983666557 0.006896552
ILMN_3241953 7.731492406 0.01724138
ILMN_1745607 9.340981723 0
ILMN_2136495 10.34601163 0
ILMN_1668111 5.909310533 0.6482759
ILMN_2295559 6.356526078 0.3275862
ILMN_1735045 6.122530178 0.4862069
ILMN_1680754 7.335123365 0.03448276
ILMN_2375184 10.1619865 0
ILMN_1659452 10.26609677 0
ILMN_1767388 13.84862284 0

Total number of rows: 29331

Table truncated, full table size 845 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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