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Sample GSM1039595 Query DataSets for GSM1039595
Status Public on May 26, 2013
Title MLP_CB3
Sample type RNA
 
Source name human cord blood progenitor cells
Organism Homo sapiens
Characteristics sorted cell type: multilymphoid progenitors (MLP)
cell surface expression: Lin- CD34+ CD38- CD45RA+ CD10+
Treatment protocol Lineage-depleted cord blood cells were thawed and flow-sorted.
Extracted molecule total RNA
Extraction protocol RNA was extracted from 2,000-5,000 sorted cells with Trizol reagent.
Label biotin
Label protocol Biotin.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Scanned on a BeadArrayâ„¢ Reader using BeadScan software (v3.2).
Data processing The data were normalized using quantile normalization in R (v2.12.1).
 
Submission date Nov 20, 2012
Last update date May 26, 2013
Contact name Elisa Laurenti
Organization name University of Cambridge
Department Haematology
Lab Laurenti laboratory
Street address Jeffrey Cheah Biomedical Centre
City Cambridge
ZIP/Postal code CB2 0AW
Country United Kingdom
 
Platform ID GPL14951
Series (1)
GSE42414 The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment.

Data table header descriptions
ID_REF
VALUE Quantile normalized and log2 transformed.
DetectionPval

Data table
ID_REF VALUE DetectionPval
ILMN_1762337 8.726527121 0
ILMN_2055271 9.058140271 0
ILMN_2383229 10.50220133 0
ILMN_1806310 8.491071072 0
ILMN_1779670 8.719562424 0
ILMN_1717783 8.045227431 0
ILMN_1814316 12.7134062 0
ILMN_2359168 13.02475406 0
ILMN_1731507 5.581283942 0.8724138
ILMN_1787689 7.106671115 0.01724138
ILMN_3241953 8.965000198 0
ILMN_1745607 11.01866434 0
ILMN_2136495 8.667725588 0
ILMN_1668111 6.009810935 0.4827586
ILMN_2295559 5.70229917 0.7862069
ILMN_1735045 7.90934133 0
ILMN_1680754 6.931351607 0.02413793
ILMN_2375184 9.59492991 0
ILMN_1659452 9.540252856 0
ILMN_1767388 12.00563039 0

Total number of rows: 29331

Table truncated, full table size 844 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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