NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM102766 Query DataSets for GSM102766
Status Public on Aug 01, 2006
Title Case L13
Sample type genomic
 
Channel 1
Source name Case L13
Organism Homo sapiens
Characteristics Archival early neoplastic breast lesion (lobular carcinoma in situ; LCIS)
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name Pooled female genomic DNA
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Extracted molecule genomic DNA
Label Cy5
 
 
Description Pooled female genomic DNA competitively hybridized against DNA from archival early neoplastic breast lesion case L13 (LCIS)
Data processing none
 
Submission date Mar 31, 2006
Last update date Jun 28, 2006
Contact name Teresa L Mastracci
E-mail(s) [email protected]
Phone 416-586-4800
Organization name Samuel Lunenfeld Research Institute
Department Mount Sinai Hospital
Lab Andrulis Lab
Street address 600 University Ave., room 984
City Toronto
State/province ON
ZIP/Postal code M5G1X5
Country Canada
 
Platform ID GPL2616
Series (1)
GSE4591 High resolution analysis of early lobular neoplastic breast lesions (ALH and LCIS) by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean signal intensity value of the spot for wavelength 595
Spot Mean Intensity (w685) Mean signal intensity value of the spot for wavelength 685
Background Median Intensity (w595) Median background intensity value for the spot in wavelength 595
Background Median Intensity (w685) Median background intensity value for the spot in wavelength 685
Spot Bkgd-subtracted Intensity (w595) Bkgd-subtracted intensity of the spot in wavelength 595
Spot Bkgd-subtracted Intensity (w685) Bkgd-subtracted intensity of the spot in wavelength 685
Spot SNR (w595) Signal to Noise Ratio for wavelength 595
Spot SNR (w685) Signal to Noise Ratio for wavelength 685
Spot Ratio (w595) Ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator
Spot Ratio (w685) Ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
Spot Log2 Ratio (w685) Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
VALUE Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Bkgd-subtracted Intensity (w595) Spot Bkgd-subtracted Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w685) VALUE
1 873.167 1540.333 875 1540 -1.833313 0.333374 -0.03558547 0.09787367 0 0 0 0
2 3135.59 2401.07 879 1550.5 2256.59 850.57 88.5394 23.91201 1.041162 0.9604073 -0.05828174 0.05819409
3 2689.414 2260.202 877 1545 1812.414 715.202 75.0901 19.54425 0.9944988 1.005471 0.007870953 -0.007958604
4 2439.153 2133.031 889 1551.5 1550.153 581.531 61.1565 17.16629 1.046111 0.9558636 -0.06512328 0.06503563
5 2455.773 2155.268 892 1543 1563.773 612.268 70.1187 21.11612 1.002323 0.9976216 -0.003435333 0.003347682
6 2840.104 2264.823 904 1568 1936.104 696.823 73.2683 30.40265 1.09039 0.9170474 -0.1249319 0.1248442
7 3063.057 2425.029 914 1565 2149.057 860.029 40.0482 26.63588 0.9806424 1.019678 0.02811329 -0.02820094
8 2667.626 2226.406 887 1550 1780.626 676.406 69.0588 22.31269 1.033096 0.9679056 -0.04706188 0.04697423
9 3169.77 2460.095 902.5 1549.5 2267.271 910.595 99.4419 34.4903 0.9771332 1.02334 0.0332853 -0.03337295
10 2955.458 2398.755 905 1564 2050.458 834.755 80.0091 24.6873 0.9639781 1.037305 0.05284015 -0.0529278
11 2876.536 2285.495 898.5 1546.5 1978.036 738.995 78.2905 21.42021 1.050433 0.9519305 -0.07107195 0.07098429
12 3655.29 2619.628 913 1549.5 2742.287 1070.128 88.6992 27.18623 1.005664 0.9943074 -0.00823613 0.008148478
13 3205.61 2506.309 896 1541 2309.608 965.309 62.2002 20.72568 0.9389606 1.064943 0.09077577 -0.09086342
14 3083.088 2409.901 886 1550 2197.088 859.901 70.4972 19.3441 1.002708 0.9972387 -0.003989299 0.003901648
15 3044.97 2412 900.5 1562 2144.47 850 74.9611 24.43717 0.9900945 1.009943 0.01427404 -0.01436169
16 3122.237 2497.619 896 1549.5 2226.237 948.119 77.1552 29.02671 0.9214766 1.085149 0.1178929 -0.1179806
17 2532.524 2213.951 906 1538 1626.524 675.951 66.3984 25.53659 0.9443232 1.058895 0.08255986 -0.08264752
18 2307.717 2067.141 904 1560 1403.717 507.141 50.3268 13.78334 1.086241 0.92055 -0.1194319 0.1193443
19 2317.642 2070.853 909 1553.5 1408.642 517.353 58.9923 15.30511 1.068537 0.935802 -0.0957249 0.09563725
20 2141.337 2023.59 924 1550.5 1217.337 473.09 48.6336 16.57725 1.009817 0.9902187 -0.01418086 0.01409321

Total number of rows: 53856

Table truncated, full table size 5604 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap