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Status
Public on Apr 13, 2006
Title
Mouse model of gastric cancer (control 78A)
Sample type
RNA
Source name
non-transgenic (FVB/N) mouse without H.felis
Organism
Mus musculus Characteristics
strain: FVB/N, gender: male, age: 10 months, transgene: none, tissue: stomach, histology: normal stomach. infection: none.
Extracted molecule
total RNA
Label
PE
Description
Total RNA was extracted from whole stomach of non-transgenic (FVB/N) mouse without H.felis infection.
Data processing
data analyzed using MAS5.0
Submission date
Mar 28, 2006
Last update date
Apr 12, 2006
Contact name
Shigeo Takaishi
E-mail(s)
[email protected] Phone
212-851-4580
Fax
212-851-4590
Organization name
Columbia University, College of Physicians and Surgeons
Department
Medicine (Division of Digestive and Liver Disease)
Lab
Prof. Timothy Wang's lab
Street address
1130 St. Nicholas Avenue, ICRC 901A
City
New York
State/province
NY
ZIP/Postal code
10032
Country
USA
Platform ID
GPL81 Series (1)
GSE4651 gene expression profiling of mouse model of Helicobacter-induced gastric cancer
Data table header descriptions ID_REF VALUE MAS5.0-calculated signal intensities
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
4.8
A
0.904333
AFFX-MurIL10_at
17.5
A
0.470241
AFFX-MurIL4_at
22.6
P
0.028457
AFFX-MurFAS_at
42.9
P
0.002556
AFFX-BioB-5_at
160.9
P
0.004017
AFFX-BioB-M_at
441.4
P
0.000081
AFFX-BioB-3_at
258.7
P
0.00039
AFFX-BioC-5_at
585.8
P
0.00007
AFFX-BioC-3_at
446.1
P
0.000044
AFFX-BioDn-5_at
570.6
P
0.000052
AFFX-BioDn-3_at
2987.3
P
0.000081
AFFX-CreX-5_at
5345.5
P
0.000044
AFFX-CreX-3_at
8896.4
P
0.000044
AFFX-BioB-5_st
4.4
A
0.559354
AFFX-BioB-M_st
36.8
A
0.41138
AFFX-BioB-3_st
9.6
A
0.824672
AFFX-BioC-5_st
4.5
A
0.897835
AFFX-BioC-3_st
12.1
A
0.617401
AFFX-BioDn-5_st
39.8
A
0.250796
AFFX-BioDn-3_st
43.3
A
0.327079
12488 316 Kbytes .Supplementary data files not provided
