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Status
Public on Apr 13, 2006
Title
Mouse model of gastric cancer (control 72A)
Sample type
RNA
Source name
non-transgenic (FVB/N) mouse with H.felis
Organism
Mus musculus Characteristics
strain: FVB/N, gender: male, age: 10 months, transgene: none, tissue: stomach, histology: intestinal metaplasia / gastric dysplasia . infection: H.felis (6 months)
Extracted molecule
total RNA
Label
PE
Description
Total RNA was extracted from whole stomach of non-transgenic (FVB/N) mouse with H.felis for 6 months.
Data processing
data analyzed using MAS5.0
Submission date
Mar 28, 2006
Last update date
Apr 12, 2006
Contact name
Shigeo Takaishi
E-mail(s)
[email protected] Phone
212-851-4580
Fax
212-851-4590
Organization name
Columbia University, College of Physicians and Surgeons
Department
Medicine (Division of Digestive and Liver Disease)
Lab
Prof. Timothy Wang's lab
Street address
1130 St. Nicholas Avenue, ICRC 901A
City
New York
State/province
NY
ZIP/Postal code
10032
Country
USA
Platform ID
GPL81 Series (1)
GSE4651 gene expression profiling of mouse model of Helicobacter-induced gastric cancer
Data table header descriptions ID_REF VALUE MAS5.0-calculated signal intensities
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
5
A
0.9273
AFFX-MurIL10_at
13.7
A
0.39692
AFFX-MurIL4_at
6.9
A
0.340661
AFFX-MurFAS_at
50.2
P
0.001593
AFFX-BioB-5_at
144.9
P
0.001593
AFFX-BioB-M_at
350.6
P
0.00007
AFFX-BioB-3_at
186.1
P
0.000297
AFFX-BioC-5_at
556.2
P
0.00007
AFFX-BioC-3_at
435.4
P
0.000044
AFFX-BioDn-5_at
614.9
P
0.000052
AFFX-BioDn-3_at
2533.1
P
0.000081
AFFX-CreX-5_at
5281
P
0.000044
AFFX-CreX-3_at
8444.4
P
0.000044
AFFX-BioB-5_st
6.5
A
0.588627
AFFX-BioB-M_st
23.4
A
0.52976
AFFX-BioB-3_st
15.4
A
0.737173
AFFX-BioC-5_st
4.2
A
0.897835
AFFX-BioC-3_st
3.1
A
0.804734
AFFX-BioDn-5_st
67.6
A
0.205732
AFFX-BioDn-3_st
60.6
A
0.185131
12488 316 Kbytes .Supplementary data files not provided
