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Status
Public on Apr 13, 2006
Title
Mouse model of gastric cancer (control 68A)
Sample type
RNA
Source name
INS-GAS mouse without Helicobacter felis
Organism
Mus musculus Characteristics
strain: FVB/N, gender: male, age: 10 months, transgene: human gastrin, tissue: stomach, histology: atrophic gastritis / intestinal metaplasia. infection: none
Extracted molecule
total RNA
Label
PE
Description
Total RNA was extracted from whole stomach of INS-GAS mouse without H.felis.
Data processing
data analyzed using MAS5.0
Submission date
Mar 28, 2006
Last update date
Apr 12, 2006
Contact name
Shigeo Takaishi
E-mail(s)
[email protected] Phone
212-851-4580
Fax
212-851-4590
Organization name
Columbia University, College of Physicians and Surgeons
Department
Medicine (Division of Digestive and Liver Disease)
Lab
Prof. Timothy Wang's lab
Street address
1130 St. Nicholas Avenue, ICRC 901A
City
New York
State/province
NY
ZIP/Postal code
10032
Country
USA
Platform ID
GPL81 Series (1)
GSE4651 gene expression profiling of mouse model of Helicobacter-induced gastric cancer
Data table header descriptions ID_REF VALUE MAS5.0-calculated signal intensities
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
5.4
A
0.883887
AFFX-MurIL10_at
20.7
A
0.425962
AFFX-MurIL4_at
13.8
A
0.139482
AFFX-MurFAS_at
43.4
M
0.054213
AFFX-BioB-5_at
155.9
P
0.009337
AFFX-BioB-M_at
391.4
P
0.000225
AFFX-BioB-3_at
159
P
0.001102
AFFX-BioC-5_at
458
P
0.00007
AFFX-BioC-3_at
395.6
P
0.000052
AFFX-BioDn-5_at
542.3
P
0.000081
AFFX-BioDn-3_at
2454.3
P
0.000095
AFFX-CreX-5_at
5174.5
P
0.000044
AFFX-CreX-3_at
8168.7
P
0.000044
AFFX-BioB-5_st
2.8
A
0.699394
AFFX-BioB-M_st
23.7
A
0.51489
AFFX-BioB-3_st
7.8
A
0.783476
AFFX-BioC-5_st
6.8
A
0.868639
AFFX-BioC-3_st
3.9
A
0.814869
AFFX-BioDn-5_st
59.8
A
0.185131
AFFX-BioDn-3_st
64.4
A
0.205732
12488 316 Kbytes .Supplementary data files not provided
