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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 13, 2006 |
| Title |
Mouse model of gastric cancer (sample 63A) |
| Sample type |
RNA |
| |
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| Source name |
INS-GAS mouse with Helicobacter felis
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| Organism |
Mus musculus |
| Characteristics |
strain: FVB/N, gender: male, age: 10 months, transgene: human gastrin, tissue: stomach, histology: gastric adenocarcinoma. infection: H.felis (6 months)
*Hypergastrinemic transgenic (INS-GAS) mice with Helicobacter felis infection for 6 months have an accelerated gastric cancer in stomach. (Wang TC et al, Gastroenterology, 2000, vol 118, p36-47)
|
| Extracted molecule |
total RNA |
| Label |
PE
|
| |
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| Description |
Total RNA was extracted from whole stomach of H.felis infected INS-GAS mouse.
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| Data processing |
data analyzed using MAS5.0
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| Submission date |
Mar 28, 2006 |
| Last update date |
Apr 12, 2006 |
| Contact name |
Shigeo Takaishi |
| E-mail(s) |
[email protected]
|
| Phone |
212-851-4580
|
| Fax |
212-851-4590
|
| Organization name |
Columbia University, College of Physicians and Surgeons
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| Department |
Medicine (Division of Digestive and Liver Disease)
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| Lab |
Prof. Timothy Wang's lab
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| Street address |
1130 St. Nicholas Avenue, ICRC 901A
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10032 |
| Country |
USA |
| |
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| Platform ID |
GPL81 |
| Series (1) |
| GSE4651 |
gene expression profiling of mouse model of Helicobacter-induced gastric cancer |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
MAS5.0-calculated signal intensities |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-MurIL2_at |
6.5 |
A |
0.868639 |
| AFFX-MurIL10_at |
24.1 |
A |
0.51489 |
| AFFX-MurIL4_at |
8.9 |
A |
0.327079 |
| AFFX-MurFAS_at |
55.1 |
P |
0.012547 |
| AFFX-BioB-5_at |
147.6 |
P |
0.004484 |
| AFFX-BioB-M_at |
350.5 |
P |
0.000052 |
| AFFX-BioB-3_at |
156.6 |
P |
0.000446 |
| AFFX-BioC-5_at |
482.3 |
P |
0.00007 |
| AFFX-BioC-3_at |
388.7 |
P |
0.000052 |
| AFFX-BioDn-5_at |
587.1 |
P |
0.000095 |
| AFFX-BioDn-3_at |
2586.8 |
P |
0.00011 |
| AFFX-CreX-5_at |
5185.5 |
P |
0.000044 |
| AFFX-CreX-3_at |
8581.2 |
P |
0.000044 |
| AFFX-BioB-5_st |
6.2 |
A |
0.48511 |
| AFFX-BioB-M_st |
35.5 |
A |
0.574038 |
| AFFX-BioB-3_st |
10.9 |
A |
0.783476 |
| AFFX-BioC-5_st |
9.2 |
A |
0.860518 |
| AFFX-BioC-3_st |
2.3 |
A |
0.868639 |
| AFFX-BioDn-5_st |
50.4 |
A |
0.262827 |
| AFFX-BioDn-3_st |
53.1 |
A |
0.095667 |
Total number of rows: 12488
Table truncated, full table size 317 Kbytes.
| Supplementary data files not provided |
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