 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 13, 2006 |
| Title |
Mouse model of gastric cancer (sample 59A) |
| Sample type |
RNA |
| |
|
| Source name |
INS-GAS mouse with Helicobacter felis
|
| Organism |
Mus musculus |
| Characteristics |
strain: FVB/N, gender: male, age: 10 months, transgene: human gastrin, tissue: stomach, histology: gastric adenocarcinoma. infection: H.felis (6 months)
*Hypergastrinemic transgenic (INS-GAS) mice with Helicobacter felis infection for 6 months have an accelerated gastric cancer in stomach. (Wang TC et al, Gastroenterology, 2000, vol 118, p36-47)
|
| Extracted molecule |
total RNA |
| Label |
PE
|
| |
|
| Description |
Total RNA was extracted from whole stomach of H.felis infected INS-GAS mouse.
|
| Data processing |
data analyzed using MAS5.0
|
| |
|
| Submission date |
Mar 28, 2006 |
| Last update date |
Apr 12, 2006 |
| Contact name |
Shigeo Takaishi |
| E-mail(s) |
[email protected]
|
| Phone |
212-851-4580
|
| Fax |
212-851-4590
|
| Organization name |
Columbia University, College of Physicians and Surgeons
|
| Department |
Medicine (Division of Digestive and Liver Disease)
|
| Lab |
Prof. Timothy Wang's lab
|
| Street address |
1130 St. Nicholas Avenue, ICRC 901A
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10032 |
| Country |
USA |
| |
|
| Platform ID |
GPL81 |
| Series (1) |
| GSE4651 |
gene expression profiling of mouse model of Helicobacter-induced gastric cancer |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
MAS5.0-calculated signal intensities |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-MurIL2_at |
11.3 |
A |
0.617401 |
| AFFX-MurIL10_at |
7.2 |
A |
0.544587 |
| AFFX-MurIL4_at |
12.2 |
A |
0.327079 |
| AFFX-MurFAS_at |
48.2 |
A |
0.062929 |
| AFFX-BioB-5_at |
136.5 |
P |
0.013811 |
| AFFX-BioB-M_at |
305.3 |
P |
0.00011 |
| AFFX-BioB-3_at |
136.1 |
P |
0.000509 |
| AFFX-BioC-5_at |
407.9 |
P |
0.000127 |
| AFFX-BioC-3_at |
313 |
P |
0.000052 |
| AFFX-BioDn-5_at |
443 |
P |
0.00011 |
| AFFX-BioDn-3_at |
2213.4 |
P |
0.000169 |
| AFFX-CreX-5_at |
4545.8 |
P |
0.000044 |
| AFFX-CreX-3_at |
7718 |
P |
0.000044 |
| AFFX-BioB-5_st |
4.7 |
A |
0.60308 |
| AFFX-BioB-M_st |
42.8 |
A |
0.340661 |
| AFFX-BioB-3_st |
10 |
A |
0.794268 |
| AFFX-BioC-5_st |
10.3 |
A |
0.772364 |
| AFFX-BioC-3_st |
3.1 |
A |
0.804734 |
| AFFX-BioDn-5_st |
63.2 |
A |
0.275146 |
| AFFX-BioDn-3_st |
83.6 |
A |
0.116113 |
Total number of rows: 12488
Table truncated, full table size 318 Kbytes.
| Supplementary data files not provided |
|
|
|
|
 |
