|
| Status |
Public on Sep 20, 2012 |
| Title |
3a_1109_P |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Lymphonode
|
| Organism |
Homo sapiens |
| Characteristics |
tumor type: Follicular Lymphoma
tumor grade: 3a
|
| Growth protocol |
Paraffin or OCT-embedded
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
standard phenol-chloroform extraction method
|
| Label |
Cy3
|
| Label protocol |
Labeling and hybridization was performed according to protocols provided by Agilent.
|
| |
|
| Channel 2 |
| Source name |
human genomic DNA (reference)
|
| Organism |
Homo sapiens |
| Characteristics |
gender: male
ref. source: Promega (Cat# G147A)
|
| Growth protocol |
Paraffin or OCT-embedded
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
standard phenol-chloroform extraction method
|
| Label |
Cy5
|
| Label protocol |
Labeling and hybridization was performed according to protocols provided by Agilent.
|
| |
|
| |
| Hybridization protocol |
Labeling and hybridization was performed according to protocols provided by Agilent.
|
| Scan protocol |
Agilent G2565 Microarray Scanner System and Agilent Feature Extraction software (v9.1) was used to generate the data
|
| Data processing |
The modified CBS algorithm was used to identify segmental gains and losses along the autosomes1. Change-points were defined as segments, corresponding to p-values < 0.05.
|
| |
|
| Submission date |
Sep 19, 2012 |
| Last update date |
Sep 20, 2012 |
| Contact name |
Elisa Oricchio |
| E-mail(s) |
[email protected]
|
| Organization name |
MSKCC
|
| Street address |
1275 York Avenue
|
| City |
New York |
| ZIP/Postal code |
10025 |
| Country |
USA |
| |
|
| Platform ID |
GPL9128 |
| Series (1) |
|
