NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1001874 Query DataSets for GSM1001874
Status Public on Oct 12, 2012
Title RT_03_5d_117_Lung_CLPR-03_RSTSRP805
Sample type RNA
 
Source name Lung tissue
Organism Mus musculus
Characteristics array type: Mouse430_2
amount to core: 30
units of amount: ul
od260: 2.337
od280: 1.176
ratio: 1.99
dilution: 1:10
rna integrity number: 9.1
bioanalyzer results: excellent
sample preservation: RNAlater
strain: B6C3F1/Crl
ncbi taxonomy id: 10090
individual: 117
developmental state: adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
age: 10
units of age: Weeks at start of exposure
tissue: Lung
tissue harvest methods: Lung samples were obtained by placing a suture loosely around the left bronchus at the site where the bronchus enters the left lung lobe. A second suture was placed around the right bronchus and pulled tightly to tie off the right lung lobes. The right lung lobes were removed and placed in RNAlater, and the left lung infused under hydrostatic pressure (~30 cm) with neutral buffered formalin. Samples placed in RNAlater were incubated overnight at 4°C and frozen the next day at < 70°C.
agent: Chloroprene
treatment repeat: 5
units of treatment repeat: days/week
treatment duration: 5, Units of Duration: days
treatment time: 6
units of treatment time: 6 hr/day
vehicle for chemical: Air
route of exposure: inhalation
dose or concentration: 0.3ppm
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, Russell Thomas, [email protected], 919 558 1311
Treatment protocol in vivo Treatment: Chloroprene, Treatment Repeat: 5, Units of Treatment Repeat: days/week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: 6 hr/day, Vehicle for Chemical: Air, Route of Exposure: inhalation, Dose or Concentration: 0.3, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_03_5d_117_Lung_CLPR-03_RSTSRP805_Mouse430_2_RSTSRP805_1: Female mice (B6C3F1/Crl) were exposed to chloroprene (CAS 126-99-8) by whole-body inhalation exposure at 0, 0.3, 2, 13, or 90 ppm. Exposures were performed for 6 hr/day, 5 days per week. The animals were sacrified at 5 days or 19 days (15 exposure days) post initiation of exposure. The right lung was excised and gene expression microarray analysis was performed using Affymetrix Mouse 430_2 arrays.
Data processing RMAExpress
Written by B. M. Bolstad <[email protected]>
Version: 1.0.5 Release
http://rmaexpress.bmbolstad.com
 
Submission date Sep 12, 2012
Last update date Oct 12, 2012
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE40795 Transcriptomic Dose Response Changes in Female Mouse and Rat Lungs following Chloroprene Exposure

Data table header descriptions
ID_REF
VALUE RMAExpress

Data table
ID_REF VALUE
1415670_at 10.452724
1415671_at 12.163354
1415672_at 12.421762
1415673_at 8.726222
1415674_a_at 10.803399
1415675_at 10.277629
1415676_a_at 11.902454
1415677_at 11.032492
1415678_at 11.484587
1415679_at 12.660367
1415680_at 10.161704
1415681_at 10.605762
1415682_at 8.774215
1415683_at 11.485709
1415684_at 9.624362
1415685_at 8.387366
1415686_at 10.854252
1415687_a_at 13.4327
1415688_at 10.837598
1415689_s_at 9.141458

Total number of rows: 45101

Table truncated, full table size 900 Kbytes.




Supplementary file Size Download File type/resource
GSM1001874_RT_03_5d_117_Lung_CLPR-03_RSTSRP805_Mouse430_2_RSTSRP805_1.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap