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Sample GSM1001873 Query DataSets for GSM1001873
Status Public on Oct 12, 2012
Title RT_03_15d_129_Lung_CLPR03_RSTSRP805
Sample type RNA
 
Source name Lung tissue
Organism Mus musculus
Characteristics array type: Mouse430_2
amount to core: 30
units of amount: ul
od260: 2.677
od280: 1.368
ratio: 1.96
dilution: 1:10
rna integrity number: 9.4
bioanalyzer results: excellent
sample preservation: RNAlater
strain: B6C3F1/Crl
ncbi taxonomy id: 10090
individual: 129
developmental state: adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
age: 10
units of age: Weeks at start of exposure
tissue: Lung
tissue harvest methods: Lung samples were obtained by placing a suture loosely around the left bronchus at the site where the bronchus enters the left lung lobe. A second suture was placed around the right bronchus and pulled tightly to tie off the right lung lobes. The right lung lobes were removed and placed in RNAlater, and the left lung infused under hydrostatic pressure (~30 cm) with neutral buffered formalin. Samples placed in RNAlater were incubated overnight at 4°C and frozen the next day at < 70°C.
agent: Chloroprene
treatment repeat: 5
units of treatment repeat: days/week
treatment duration: 15, Units of Duration: days
treatment time: 6
units of treatment time: 6 hr/day
vehicle for chemical: Air
route of exposure: inhalation
dose or concentration: 0.3ppm
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, Russell Thomas, [email protected], 919 558 1311
Treatment protocol in vivo Treatment: Chloroprene, Treatment Repeat: 5, Units of Treatment Repeat: days/week, Treatment Duration: 15, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: 6 hr/day, Vehicle for Chemical: Air, Route of Exposure: inhalation, Dose or Concentration: 0.3, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_03_15d_129_Lung_CLPR03_RSTSRP805_Mouse430_2_RSTSRP805_1: Female mice (B6C3F1/Crl) were exposed to chloroprene (CAS 126-99-8) by whole-body inhalation exposure at 0, 0.3, 2, 13, or 90 ppm. Exposures were performed for 6 hr/day, 5 days per week. The animals were sacrified at 5 days or 19 days (15 exposure days) post initiation of exposure. The right lung was excised and gene expression microarray analysis was performed using Affymetrix Mouse 430_2 arrays.
Data processing RMAExpress
Written by B. M. Bolstad <[email protected]>
Version: 1.0.5 Release
http://rmaexpress.bmbolstad.com
 
Submission date Sep 12, 2012
Last update date Oct 12, 2012
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE40795 Transcriptomic Dose Response Changes in Female Mouse and Rat Lungs following Chloroprene Exposure

Data table header descriptions
ID_REF
VALUE RMAExpress

Data table
ID_REF VALUE
1415670_at 10.336526
1415671_at 12.045331
1415672_at 12.434426
1415673_at 8.592914
1415674_a_at 10.420746
1415675_at 10.120716
1415676_a_at 11.818681
1415677_at 10.728061
1415678_at 11.246886
1415679_at 12.367362
1415680_at 9.834589
1415681_at 10.428067
1415682_at 8.765771
1415683_at 11.298807
1415684_at 9.570593
1415685_at 8.46253
1415686_at 10.752386
1415687_a_at 13.401782
1415688_at 10.660178
1415689_s_at 9.530445

Total number of rows: 45101

Table truncated, full table size 900 Kbytes.




Supplementary file Size Download File type/resource
GSM1001873_RT_03_15d_129_Lung_CLPR03_RSTSRP805_Mouse430_2_RSTSRP805_1.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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