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Sample GSM1001869 Query DataSets for GSM1001869
Status Public on Oct 12, 2012
Title RT_03_15d_125_Lung_CLPR03_RSTSRP805
Sample type RNA
 
Source name Lung tissue
Organism Mus musculus
Characteristics array type: Mouse430_2
amount to core: 30
units of amount: ul
od260: 3.964
od280: 1.97
ratio: 2.01
dilution: 1:10
rna integrity number: 9.4
bioanalyzer results: excellent
sample preservation: RNAlater
strain: B6C3F1/Crl
ncbi taxonomy id: 10090
individual: 125
developmental state: adult
sacrifice method: Pentobarbital (5.2 mg/kg) and exsanguination
age: 10
units of age: Weeks at start of exposure
tissue: Lung
tissue harvest methods: Lung samples were obtained by placing a suture loosely around the left bronchus at the site where the bronchus enters the left lung lobe. A second suture was placed around the right bronchus and pulled tightly to tie off the right lung lobes. The right lung lobes were removed and placed in RNAlater, and the left lung infused under hydrostatic pressure (~30 cm) with neutral buffered formalin. Samples placed in RNAlater were incubated overnight at 4°C and frozen the next day at < 70°C.
agent: Chloroprene
treatment repeat: 5
units of treatment repeat: days/week
treatment duration: 15, Units of Duration: days
treatment time: 6
units of treatment time: 6 hr/day
vehicle for chemical: Air
route of exposure: inhalation
dose or concentration: 0.3ppm
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, Russell Thomas, [email protected], 919 558 1311
Treatment protocol in vivo Treatment: Chloroprene, Treatment Repeat: 5, Units of Treatment Repeat: days/week, Treatment Duration: 15, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: 6 hr/day, Vehicle for Chemical: Air, Route of Exposure: inhalation, Dose or Concentration: 0.3, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_03_15d_125_Lung_CLPR03_RSTSRP805_Mouse430_2_RSTSRP805_1: Female mice (B6C3F1/Crl) were exposed to chloroprene (CAS 126-99-8) by whole-body inhalation exposure at 0, 0.3, 2, 13, or 90 ppm. Exposures were performed for 6 hr/day, 5 days per week. The animals were sacrified at 5 days or 19 days (15 exposure days) post initiation of exposure. The right lung was excised and gene expression microarray analysis was performed using Affymetrix Mouse 430_2 arrays.
Data processing RMAExpress
Written by B. M. Bolstad <[email protected]>
Version: 1.0.5 Release
http://rmaexpress.bmbolstad.com
 
Submission date Sep 12, 2012
Last update date Oct 12, 2012
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE40795 Transcriptomic Dose Response Changes in Female Mouse and Rat Lungs following Chloroprene Exposure

Data table header descriptions
ID_REF
VALUE RMAExpress

Data table
ID_REF VALUE
1415670_at 10.467474
1415671_at 12.117171
1415672_at 12.436629
1415673_at 8.54509
1415674_a_at 10.546545
1415675_at 10.056676
1415676_a_at 11.839389
1415677_at 10.891546
1415678_at 11.376298
1415679_at 12.386392
1415680_at 10.070223
1415681_at 10.524883
1415682_at 8.680122
1415683_at 11.392876
1415684_at 9.460345
1415685_at 8.608808
1415686_at 10.712295
1415687_a_at 13.485272
1415688_at 10.771561
1415689_s_at 9.373093

Total number of rows: 45101

Table truncated, full table size 900 Kbytes.




Supplementary file Size Download File type/resource
GSM1001869_RT_03_15d_125_Lung_CLPR03_RSTSRP805_Mouse430_2_RSTSRP805_1.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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